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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 30, Exons: 17, Five Prime UTRs: 2, mRNAs: 2, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16840:CDS:16 | 59 | Chr3: 5738020-5738078 | Arabidopsis thaliana |
AT3G16840:CDS:15 | 82 | Chr3: 5738178-5738259 | Arabidopsis thaliana |
AT3G16840:CDS:14 | 159 | Chr3: 5738481-5738639 | Arabidopsis thaliana |
AT3G16840:CDS:13 | 66 | Chr3: 5738785-5738850 | Arabidopsis thaliana |
AT3G16840:CDS:12 | 141 | Chr3: 5738959-5739099 | Arabidopsis thaliana |
AT3G16840:CDS:11 | 105 | Chr3: 5739354-5739458 | Arabidopsis thaliana |
AT3G16840:CDS:10 | 117 | Chr3: 5739612-5739728 | Arabidopsis thaliana |
AT3G16840:CDS:9 | 123 | Chr3: 5739808-5739930 | Arabidopsis thaliana |
AT3G16840:CDS:8 | 181 | Chr3: 5740086-5740266 | Arabidopsis thaliana |
AT3G16840:CDS:7 | 389 | Chr3: 5740458-5740846 | Arabidopsis thaliana |
AT3G16840:CDS:6 | 177 | Chr3: 5741099-5741275 | Arabidopsis thaliana |
AT3G16840:CDS:5 | 195 | Chr3: 5741401-5741595 | Arabidopsis thaliana |
AT3G16840:CDS:3 | 188 | Chr3: 5741668-5741855 | Arabidopsis thaliana |
AT3G16840:CDS:2 | 315 | Chr3: 5742328-5742642 | Arabidopsis thaliana |
AT3G16840:CDS:1 | 187 | Chr3: 5742856-5743042 | Arabidopsis thaliana |
AT3G16840:CDS:16.1 | 59 | Chr3: 5738020-5738078 | Arabidopsis thaliana |
AT3G16840:CDS:15.1 | 82 | Chr3: 5738178-5738259 | Arabidopsis thaliana |
AT3G16840:CDS:14.1 | 159 | Chr3: 5738481-5738639 | Arabidopsis thaliana |
AT3G16840:CDS:13.1 | 66 | Chr3: 5738785-5738850 | Arabidopsis thaliana |
AT3G16840:CDS:12.1 | 141 | Chr3: 5738959-5739099 | Arabidopsis thaliana |
AT3G16840:CDS:11.1 | 105 | Chr3: 5739354-5739458 | Arabidopsis thaliana |
AT3G16840:CDS:10.1 | 117 | Chr3: 5739612-5739728 | Arabidopsis thaliana |
AT3G16840:CDS:9.1 | 123 | Chr3: 5739808-5739930 | Arabidopsis thaliana |
AT3G16840:CDS:8.1 | 181 | Chr3: 5740086-5740266 | Arabidopsis thaliana |
AT3G16840:CDS:7.1 | 389 | Chr3: 5740458-5740846 | Arabidopsis thaliana |
AT3G16840:CDS:6.1 | 177 | Chr3: 5741099-5741275 | Arabidopsis thaliana |
AT3G16840:CDS:5.1 | 195 | Chr3: 5741401-5741595 | Arabidopsis thaliana |
AT3G16840:CDS:4 | 185 | Chr3: 5741668-5741852 | Arabidopsis thaliana |
AT3G16840:CDS:2.1 | 315 | Chr3: 5742328-5742642 | Arabidopsis thaliana |
AT3G16840:CDS:1.1 | 187 | Chr3: 5742856-5743042 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16840:exon:4 | 188 | Chr3: 5741668-5741855 | Arabidopsis thaliana |
AT3G16840:exon:2 | 357 | Chr3: 5742856-5743212 | Arabidopsis thaliana |
AT3G16840:exon:17 | 193 | Chr3: 5737886-5738078 | Arabidopsis thaliana |
AT3G16840:exon:16 | 82 | Chr3: 5738178-5738259 | Arabidopsis thaliana |
AT3G16840:exon:15 | 159 | Chr3: 5738481-5738639 | Arabidopsis thaliana |
AT3G16840:exon:14 | 66 | Chr3: 5738785-5738850 | Arabidopsis thaliana |
AT3G16840:exon:13 | 141 | Chr3: 5738959-5739099 | Arabidopsis thaliana |
AT3G16840:exon:12 | 105 | Chr3: 5739354-5739458 | Arabidopsis thaliana |
AT3G16840:exon:11 | 117 | Chr3: 5739612-5739728 | Arabidopsis thaliana |
AT3G16840:exon:10 | 123 | Chr3: 5739808-5739930 | Arabidopsis thaliana |
AT3G16840:exon:9 | 181 | Chr3: 5740086-5740266 | Arabidopsis thaliana |
AT3G16840:exon:8 | 389 | Chr3: 5740458-5740846 | Arabidopsis thaliana |
AT3G16840:exon:7 | 177 | Chr3: 5741099-5741275 | Arabidopsis thaliana |
AT3G16840:exon:6 | 195 | Chr3: 5741401-5741595 | Arabidopsis thaliana |
AT3G16840:exon:5 | 185 | Chr3: 5741668-5741852 | Arabidopsis thaliana |
AT3G16840:exon:3 | 315 | Chr3: 5742328-5742642 | Arabidopsis thaliana |
AT3G16840:exon:1 | 480 | Chr3: 5742856-5743335 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16840:five_prime_UTR:2 | 170 | Chr3: 5743043-5743212 | Arabidopsis thaliana |
AT3G16840:five_prime_UTR:1 | 293 | Chr3: 5743043-5743335 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G16840.2 | 2788 | Chr3: 5737886-5743212 |
AT3G16840.1 | 2908 | Chr3: 5737886-5743335 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16840:three_prime_UTR:1 | 134 | Chr3: 5737886-5738019 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE24140 | 158 | Chr3: 5742337-5742494 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE24140:transposon_fragment:1 | 158 | Chr3: 5742337-5742494 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RH13_ARATH | similarity | Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ATP binding | ECO |
ATP hydrolysis activity | ECO |
RNA helicase activity | ECO |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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