External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 155, Exons: 29, Five Prime UTRs: 13, Genes: 2, mRNAs: 13, miRNAs: 3, miRNA Primary Transcripts: 2, Three Prime UTRs: 12
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16230:CDS:1 | 26 | Chr3: 5500563-5500588 | Arabidopsis thaliana |
AT3G16230:CDS:2 | 49 | Chr3: 5500759-5500807 | Arabidopsis thaliana |
AT3G16230:CDS:3 | 124 | Chr3: 5500946-5501069 | Arabidopsis thaliana |
AT3G16230:CDS:5 | 122 | Chr3: 5501158-5501279 | Arabidopsis thaliana |
AT3G16230:CDS:6 | 38 | Chr3: 5501363-5501400 | Arabidopsis thaliana |
AT3G16230:CDS:7 | 80 | Chr3: 5501476-5501555 | Arabidopsis thaliana |
AT3G16230:CDS:9 | 68 | Chr3: 5501692-5501759 | Arabidopsis thaliana |
AT3G16230:CDS:10 | 280 | Chr3: 5501868-5502147 | Arabidopsis thaliana |
AT3G16230:CDS:11 | 113 | Chr3: 5502239-5502351 | Arabidopsis thaliana |
AT3G16230:CDS:12 | 66 | Chr3: 5502431-5502496 | Arabidopsis thaliana |
AT3G16230:CDS:13 | 91 | Chr3: 5502603-5502693 | Arabidopsis thaliana |
AT3G16230:CDS:15 | 68 | Chr3: 5502800-5502867 | Arabidopsis thaliana |
AT3G16230:CDS:17 | 41 | Chr3: 5502991-5503031 | Arabidopsis thaliana |
AT3G16230:CDS:18 | 184 | Chr3: 5503120-5503303 | Arabidopsis thaliana |
AT3G16230:CDS:1.1 | 26 | Chr3: 5500563-5500588 | Arabidopsis thaliana |
AT3G16230:CDS:2.1 | 49 | Chr3: 5500759-5500807 | Arabidopsis thaliana |
AT3G16230:CDS:3.1 | 124 | Chr3: 5500946-5501069 | Arabidopsis thaliana |
AT3G16230:CDS:5.1 | 122 | Chr3: 5501158-5501279 | Arabidopsis thaliana |
AT3G16230:CDS:6.1 | 38 | Chr3: 5501363-5501400 | Arabidopsis thaliana |
AT3G16230:CDS:7.1 | 80 | Chr3: 5501476-5501555 | Arabidopsis thaliana |
AT3G16230:CDS:9.1 | 68 | Chr3: 5501692-5501759 | Arabidopsis thaliana |
AT3G16230:CDS:10.1 | 280 | Chr3: 5501868-5502147 | Arabidopsis thaliana |
AT3G16230:CDS:11.1 | 113 | Chr3: 5502239-5502351 | Arabidopsis thaliana |
AT3G16230:CDS:12.1 | 66 | Chr3: 5502431-5502496 | Arabidopsis thaliana |
AT3G16230:CDS:14 | 153 | Chr3: 5502603-5502755 | Arabidopsis thaliana |
AT3G16230:CDS:1.2 | 26 | Chr3: 5500563-5500588 | Arabidopsis thaliana |
AT3G16230:CDS:2.2 | 49 | Chr3: 5500759-5500807 | Arabidopsis thaliana |
AT3G16230:CDS:3.2 | 124 | Chr3: 5500946-5501069 | Arabidopsis thaliana |
AT3G16230:CDS:5.2 | 122 | Chr3: 5501158-5501279 | Arabidopsis thaliana |
AT3G16230:CDS:6.2 | 38 | Chr3: 5501363-5501400 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16230:exon:1 | 219 | Chr3: 5500054-5500272 | Arabidopsis thaliana |
AT3G16230:exon:29 | 454 | Chr3: 5503120-5503573 | Arabidopsis thaliana |
AT3G16230:exon:20 | 265 | Chr3: 5502603-5502867 | Arabidopsis thaliana |
AT3G16230:exon:2 | 155 | Chr3: 5500118-5500272 | Arabidopsis thaliana |
AT3G16230:exon:6 | 101 | Chr3: 5500488-5500588 | Arabidopsis thaliana |
AT3G16230:exon:21 | 429 | Chr3: 5502603-5503031 | Arabidopsis thaliana |
AT3G16230:exon:28 | 442 | Chr3: 5503120-5503561 | Arabidopsis thaliana |
AT3G16230:exon:7 | 98 | Chr3: 5500491-5500588 | Arabidopsis thaliana |
AT3G16230:exon:26 | 426 | Chr3: 5503120-5503545 | Arabidopsis thaliana |
AT3G16230:exon:3 | 95 | Chr3: 5500178-5500272 | Arabidopsis thaliana |
AT3G16230:exon:4 | 222 | Chr3: 5500367-5500588 | Arabidopsis thaliana |
AT3G16230:exon:5 | 148 | Chr3: 5500441-5500588 | Arabidopsis thaliana |
AT3G16230:exon:9 | 49 | Chr3: 5500759-5500807 | Arabidopsis thaliana |
AT3G16230:exon:23 | 232 | Chr3: 5502800-5503031 | Arabidopsis thaliana |
AT3G16230:exon:27 | 440 | Chr3: 5503120-5503559 | Arabidopsis thaliana |
AT3G16230:exon:8 | 189 | Chr3: 5500619-5500807 | Arabidopsis thaliana |
AT3G16230:exon:10 | 124 | Chr3: 5500946-5501069 | Arabidopsis thaliana |
AT3G16230:exon:12 | 122 | Chr3: 5501158-5501279 | Arabidopsis thaliana |
AT3G16230:exon:11 | 143 | Chr3: 5501137-5501279 | Arabidopsis thaliana |
AT3G16230:exon:13 | 38 | Chr3: 5501363-5501400 | Arabidopsis thaliana |
AT3G16230:exon:14 | 80 | Chr3: 5501476-5501555 | Arabidopsis thaliana |
AT3G16230:exon:15 | 68 | Chr3: 5501692-5501759 | Arabidopsis thaliana |
AT3G16230:exon:16 | 280 | Chr3: 5501868-5502147 | Arabidopsis thaliana |
AT3G16230:exon:17 | 113 | Chr3: 5502239-5502351 | Arabidopsis thaliana |
AT3G16230:exon:18 | 66 | Chr3: 5502431-5502496 | Arabidopsis thaliana |
AT3G16230:exon:19 | 91 | Chr3: 5502603-5502693 | Arabidopsis thaliana |
AT3G16230:exon:22 | 68 | Chr3: 5502800-5502867 | Arabidopsis thaliana |
AT3G16230:exon:24 | 41 | Chr3: 5502991-5503031 | Arabidopsis thaliana |
AT3G16230:exon:25 | 424 | Chr3: 5503120-5503543 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16230:five_prime_UTR:1 | 219 | Chr3: 5500054-5500272 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:7 | 72 | Chr3: 5500491-5500562 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:2 | 155 | Chr3: 5500118-5500272 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:6 | 75 | Chr3: 5500488-5500562 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:8 | 98 | Chr3: 5500491-5500588 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:3 | 95 | Chr3: 5500178-5500272 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:4 | 196 | Chr3: 5500367-5500562 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:5 | 122 | Chr3: 5500441-5500562 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:9 | 189 | Chr3: 5500619-5500807 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:10 | 45 | Chr3: 5500946-5500990 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:11 | 143 | Chr3: 5501137-5501279 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:12 | 38 | Chr3: 5501363-5501400 | Arabidopsis thaliana |
AT3G16230:five_prime_UTR:13 | 13 | Chr3: 5501476-5501488 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G03245 | MIR2934 | 121 | Chr3: 5500032-5500152 | A. thaliana | microRNA ath-MIR2934 precursor;(source:Araport11) | NULL | ath-MIR2934 | |||
AT3G03255 | MIR782 | 111 | Chr3: 5500037-5500147 | A. thaliana | microRNA ath-MIR782 precursor;(source:Araport11) | NULL | ath-MIR782 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G16230.1 | 1911 | Chr3: 5500054-5503573 |
AT3G16230.6 | 2017 | Chr3: 5500054-5503573 |
AT3G16230.5 | 2034 | Chr3: 5500054-5503573 |
AT3G16230.4 | 2140 | Chr3: 5500054-5503573 |
AT3G16230.8 | 1961 | Chr3: 5500118-5503561 |
AT3G16230.9 | 1944 | Chr3: 5500118-5503561 |
AT3G16230.10 | 1838 | Chr3: 5500118-5503561 |
AT3G16230.7 | 2067 | Chr3: 5500118-5503561 |
AT3G16230.3 | 1710 | Chr3: 5500178-5503545 |
AT3G16230.2 | 1897 | Chr3: 5500178-5503559 |
AT3G16230.11 | 1851 | Chr3: 5500441-5503559 |
AT3G16230.12 | 1704 | Chr3: 5500619-5503543 |
AT3G16230.13 | 1412 | Chr3: 5501137-5503543 |
miRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
ath-miR2934-3p | 21 | Chr3: 5500043-5500063 |
ath-miR782 | 21 | Chr3: 5500048-5500068 |
ath-miR2934-5p | 21 | Chr3: 5500123-5500143 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G03245.1 | 121 | Chr3: 5500032-5500152 |
AT3G03255.1 | 111 | Chr3: 5500037-5500147 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G16230:three_prime_UTR:12 | 270 | Chr3: 5503304-5503573 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:7 | 454 | Chr3: 5503120-5503573 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:1 | 112 | Chr3: 5502756-5502867 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:4 | 41 | Chr3: 5502991-5503031 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:11 | 258 | Chr3: 5503304-5503561 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:2 | 276 | Chr3: 5502756-5503031 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:6 | 442 | Chr3: 5503120-5503561 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:9 | 242 | Chr3: 5503304-5503545 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:10 | 256 | Chr3: 5503304-5503559 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:3 | 149 | Chr3: 5502883-5503031 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:5 | 440 | Chr3: 5503120-5503559 | Arabidopsis thaliana |
AT3G16230:three_prime_UTR:8 | 240 | Chr3: 5503304-5503543 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
RNA binding | ECO |
biological process | |
DNA alkylation repair | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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