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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G15840:CDS:12 | 123 | Chr3: 5356782-5356904 | Arabidopsis thaliana |
AT3G15840:CDS:10 | 111 | Chr3: 5356977-5357087 | Arabidopsis thaliana |
AT3G15840:CDS:9 | 113 | Chr3: 5357181-5357293 | Arabidopsis thaliana |
AT3G15840:CDS:8 | 114 | Chr3: 5357394-5357507 | Arabidopsis thaliana |
AT3G15840:CDS:6 | 79 | Chr3: 5357811-5357889 | Arabidopsis thaliana |
AT3G15840:CDS:5 | 85 | Chr3: 5357966-5358050 | Arabidopsis thaliana |
AT3G15840:CDS:3 | 109 | Chr3: 5358144-5358252 | Arabidopsis thaliana |
AT3G15840:CDS:1 | 73 | Chr3: 5358346-5358418 | Arabidopsis thaliana |
AT3G15840:CDS:12.1 | 123 | Chr3: 5356782-5356904 | Arabidopsis thaliana |
AT3G15840:CDS:10.1 | 111 | Chr3: 5356977-5357087 | Arabidopsis thaliana |
AT3G15840:CDS:9.1 | 113 | Chr3: 5357181-5357293 | Arabidopsis thaliana |
AT3G15840:CDS:8.1 | 114 | Chr3: 5357394-5357507 | Arabidopsis thaliana |
AT3G15840:CDS:6.1 | 79 | Chr3: 5357811-5357889 | Arabidopsis thaliana |
AT3G15840:CDS:5.1 | 85 | Chr3: 5357966-5358050 | Arabidopsis thaliana |
AT3G15840:CDS:2 | 122 | Chr3: 5358144-5358265 | Arabidopsis thaliana |
AT3G15840:CDS:12.2 | 123 | Chr3: 5356782-5356904 | Arabidopsis thaliana |
AT3G15840:CDS:10.2 | 111 | Chr3: 5356977-5357087 | Arabidopsis thaliana |
AT3G15840:CDS:9.2 | 113 | Chr3: 5357181-5357293 | Arabidopsis thaliana |
AT3G15840:CDS:8.2 | 114 | Chr3: 5357394-5357507 | Arabidopsis thaliana |
AT3G15840:CDS:7 | 70 | Chr3: 5357811-5357880 | Arabidopsis thaliana |
AT3G15840:CDS:5.2 | 85 | Chr3: 5357966-5358050 | Arabidopsis thaliana |
AT3G15840:CDS:3.1 | 109 | Chr3: 5358144-5358252 | Arabidopsis thaliana |
AT3G15840:CDS:1.1 | 73 | Chr3: 5358346-5358418 | Arabidopsis thaliana |
AT3G15840:CDS:12.3 | 123 | Chr3: 5356782-5356904 | Arabidopsis thaliana |
AT3G15840:CDS:10.3 | 111 | Chr3: 5356977-5357087 | Arabidopsis thaliana |
AT3G15840:CDS:9.3 | 113 | Chr3: 5357181-5357293 | Arabidopsis thaliana |
AT3G15840:CDS:8.3 | 114 | Chr3: 5357394-5357507 | Arabidopsis thaliana |
AT3G15840:CDS:6.2 | 79 | Chr3: 5357811-5357889 | Arabidopsis thaliana |
AT3G15840:CDS:4 | 105 | Chr3: 5357966-5358070 | Arabidopsis thaliana |
AT3G15840:CDS:13 | 119 | Chr3: 5356782-5356900 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G15840:exon:20 | 318 | Chr3: 5356587-5356904 | Arabidopsis thaliana |
AT3G15840:exon:1 | 251 | Chr3: 5358346-5358596 | Arabidopsis thaliana |
AT3G15840:exon:19 | 304 | Chr3: 5356601-5356904 | Arabidopsis thaliana |
AT3G15840:exon:6 | 125 | Chr3: 5358144-5358268 | Arabidopsis thaliana |
AT3G15840:exon:2 | 248 | Chr3: 5358346-5358593 | Arabidopsis thaliana |
AT3G15840:exon:18 | 268 | Chr3: 5356637-5356904 | Arabidopsis thaliana |
AT3G15840:exon:11 | 70 | Chr3: 5357811-5357880 | Arabidopsis thaliana |
AT3G15840:exon:4 | 96 | Chr3: 5358346-5358441 | Arabidopsis thaliana |
AT3G15840:exon:17 | 267 | Chr3: 5356638-5356904 | Arabidopsis thaliana |
AT3G15840:exon:14 | 111 | Chr3: 5356977-5357087 | Arabidopsis thaliana |
AT3G15840:exon:8 | 287 | Chr3: 5357966-5358252 | Arabidopsis thaliana |
AT3G15840:exon:5 | 82 | Chr3: 5358346-5358427 | Arabidopsis thaliana |
AT3G15840:exon:16 | 251 | Chr3: 5356650-5356900 | Arabidopsis thaliana |
AT3G15840:exon:15 | 115 | Chr3: 5356973-5357087 | Arabidopsis thaliana |
AT3G15840:exon:13 | 113 | Chr3: 5357181-5357293 | Arabidopsis thaliana |
AT3G15840:exon:12 | 114 | Chr3: 5357394-5357507 | Arabidopsis thaliana |
AT3G15840:exon:10 | 79 | Chr3: 5357811-5357889 | Arabidopsis thaliana |
AT3G15840:exon:9 | 85 | Chr3: 5357966-5358050 | Arabidopsis thaliana |
AT3G15840:exon:7 | 109 | Chr3: 5358144-5358252 | Arabidopsis thaliana |
AT3G15840:exon:3 | 154 | Chr3: 5358346-5358499 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G15840:five_prime_UTR:1 | 178 | Chr3: 5358419-5358596 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:6 | 3 | Chr3: 5358266-5358268 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:4 | 248 | Chr3: 5358346-5358593 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:3 | 23 | Chr3: 5358419-5358441 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:7 | 182 | Chr3: 5358071-5358252 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:5 | 82 | Chr3: 5358346-5358427 | Arabidopsis thaliana |
AT3G15840:five_prime_UTR:2 | 81 | Chr3: 5358419-5358499 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G15840.1 | 1180 | Chr3: 5356587-5358596 |
AT3G15840.5 | 1179 | Chr3: 5356601-5358593 |
AT3G15840.2 | 966 | Chr3: 5356637-5358441 |
AT3G15840.4 | 1053 | Chr3: 5356638-5358427 |
AT3G15840.3 | 1020 | Chr3: 5356650-5358499 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G15840:three_prime_UTR:5 | 195 | Chr3: 5356587-5356781 | Arabidopsis thaliana |
AT3G15840:three_prime_UTR:4 | 181 | Chr3: 5356601-5356781 | Arabidopsis thaliana |
AT3G15840:three_prime_UTR:3 | 145 | Chr3: 5356637-5356781 | Arabidopsis thaliana |
AT3G15840:three_prime_UTR:2 | 144 | Chr3: 5356638-5356781 | Arabidopsis thaliana |
AT3G15840:three_prime_UTR:1 | 132 | Chr3: 5356650-5356781 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PIFI_ARATH | function | Required during nonphotochemical quenching (PubMed:17573537). Involved in NAD(P)H dehydrogenase complex-mediated chlororespiratory electron transport which mediates electron flow from stromal reductants to the plastoquinone (PQ) pool during chlorophyll fluorescence increase after turning off actinic light, in response to photoinhibition conditions (e.g. high light intensities), and upon long-term mild heat stress (PubMed:17573537). |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
chloroplast stroma | ECO |
thylakoid | ECO |
chloroplast | ECO |
molecular function | |
No terms in this category. | |
biological process | |
cellular heat acclimation | ECO |
chlororespiration | ECO |
nonphotochemical quenching | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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