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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G14980:CDS:12 | 470 | Chr3: 5039931-5040400 | Arabidopsis thaliana |
AT3G14980:CDS:10 | 202 | Chr3: 5040465-5040666 | Arabidopsis thaliana |
AT3G14980:CDS:9 | 100 | Chr3: 5040870-5040969 | Arabidopsis thaliana |
AT3G14980:CDS:7 | 87 | Chr3: 5041164-5041250 | Arabidopsis thaliana |
AT3G14980:CDS:6 | 242 | Chr3: 5041374-5041615 | Arabidopsis thaliana |
AT3G14980:CDS:5 | 83 | Chr3: 5041800-5041882 | Arabidopsis thaliana |
AT3G14980:CDS:4 | 118 | Chr3: 5042200-5042317 | Arabidopsis thaliana |
AT3G14980:CDS:2 | 2268 | Chr3: 5042544-5044811 | Arabidopsis thaliana |
AT3G14980:CDS:12.1 | 470 | Chr3: 5039931-5040400 | Arabidopsis thaliana |
AT3G14980:CDS:10.1 | 202 | Chr3: 5040465-5040666 | Arabidopsis thaliana |
AT3G14980:CDS:9.1 | 100 | Chr3: 5040870-5040969 | Arabidopsis thaliana |
AT3G14980:CDS:7.1 | 87 | Chr3: 5041164-5041250 | Arabidopsis thaliana |
AT3G14980:CDS:6.1 | 242 | Chr3: 5041374-5041615 | Arabidopsis thaliana |
AT3G14980:CDS:5.1 | 83 | Chr3: 5041800-5041882 | Arabidopsis thaliana |
AT3G14980:CDS:4.1 | 118 | Chr3: 5042200-5042317 | Arabidopsis thaliana |
AT3G14980:CDS:2.1 | 2268 | Chr3: 5042544-5044811 | Arabidopsis thaliana |
AT3G14980:CDS:11 | 249 | Chr3: 5040418-5040666 | Arabidopsis thaliana |
AT3G14980:CDS:9.2 | 100 | Chr3: 5040870-5040969 | Arabidopsis thaliana |
AT3G14980:CDS:7.2 | 87 | Chr3: 5041164-5041250 | Arabidopsis thaliana |
AT3G14980:CDS:6.2 | 242 | Chr3: 5041374-5041615 | Arabidopsis thaliana |
AT3G14980:CDS:5.2 | 83 | Chr3: 5041800-5041882 | Arabidopsis thaliana |
AT3G14980:CDS:4.2 | 118 | Chr3: 5042200-5042317 | Arabidopsis thaliana |
AT3G14980:CDS:2.2 | 2268 | Chr3: 5042544-5044811 | Arabidopsis thaliana |
AT3G14980:CDS:8 | 97 | Chr3: 5041154-5041250 | Arabidopsis thaliana |
AT3G14980:CDS:6.3 | 242 | Chr3: 5041374-5041615 | Arabidopsis thaliana |
AT3G14980:CDS:5.3 | 83 | Chr3: 5041800-5041882 | Arabidopsis thaliana |
AT3G14980:CDS:4.3 | 118 | Chr3: 5042200-5042317 | Arabidopsis thaliana |
AT3G14980:CDS:2.3 | 2268 | Chr3: 5042544-5044811 | Arabidopsis thaliana |
AT3G14980:CDS:12.2 | 470 | Chr3: 5039931-5040400 | Arabidopsis thaliana |
AT3G14980:CDS:10.2 | 202 | Chr3: 5040465-5040666 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G14980:exon:3 | 70 | Chr3: 5044953-5045022 | Arabidopsis thaliana |
AT3G14980:exon:19 | 589 | Chr3: 5039812-5040400 | Arabidopsis thaliana |
AT3G14980:exon:18 | 855 | Chr3: 5039812-5040666 | Arabidopsis thaliana |
AT3G14980:exon:1 | 402 | Chr3: 5045124-5045525 | Arabidopsis thaliana |
AT3G14980:exon:17 | 576 | Chr3: 5039825-5040400 | Arabidopsis thaliana |
AT3G14980:exon:12 | 381 | Chr3: 5040870-5041250 | Arabidopsis thaliana |
AT3G14980:exon:16 | 575 | Chr3: 5039826-5040400 | Arabidopsis thaliana |
AT3G14980:exon:7 | 1973 | Chr3: 5042544-5044516 | Arabidopsis thaliana |
AT3G14980:exon:5 | 223 | Chr3: 5044652-5044874 | Arabidopsis thaliana |
AT3G14980:exon:2 | 397 | Chr3: 5045124-5045520 | Arabidopsis thaliana |
AT3G14980:exon:15 | 509 | Chr3: 5039892-5040400 | Arabidopsis thaliana |
AT3G14980:exon:14 | 202 | Chr3: 5040465-5040666 | Arabidopsis thaliana |
AT3G14980:exon:13 | 100 | Chr3: 5040870-5040969 | Arabidopsis thaliana |
AT3G14980:exon:11 | 87 | Chr3: 5041164-5041250 | Arabidopsis thaliana |
AT3G14980:exon:10 | 242 | Chr3: 5041374-5041615 | Arabidopsis thaliana |
AT3G14980:exon:9 | 83 | Chr3: 5041800-5041882 | Arabidopsis thaliana |
AT3G14980:exon:8 | 118 | Chr3: 5042200-5042317 | Arabidopsis thaliana |
AT3G14980:exon:6 | 2331 | Chr3: 5042544-5044874 | Arabidopsis thaliana |
AT3G14980:exon:4 | 35 | Chr3: 5044953-5044987 | Arabidopsis thaliana |
AT3G14981:exon:1 | 219 | Chr3: 5045110-5045328 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G14980:five_prime_UTR:3 | 70 | Chr3: 5044953-5045022 | Arabidopsis thaliana |
AT3G14980:five_prime_UTR:1 | 402 | Chr3: 5045124-5045525 | Arabidopsis thaliana |
AT3G14980:five_prime_UTR:2 | 397 | Chr3: 5045124-5045520 | Arabidopsis thaliana |
AT3G14980:five_prime_UTR:5 | 63 | Chr3: 5044812-5044874 | Arabidopsis thaliana |
AT3G14980:five_prime_UTR:4 | 35 | Chr3: 5044953-5044987 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G14981 | locus:4515103070 | AT3G14981 | 219 | Chr3: 5045110-5045328 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G14980.2 | 4224 | Chr3: 5039812-5045525 |
AT3G14980.1 | 4154 | Chr3: 5039812-5045525 |
AT3G14980.3 | 4218 | Chr3: 5039812-5045525 |
AT3G14980.4 | 4330 | Chr3: 5039825-5045520 |
AT3G14980.5 | 4000 | Chr3: 5039826-5045520 |
AT3G14980.6 | 3707 | Chr3: 5039892-5044987 |
AT3G14981.1 | 219 | Chr3: 5045110-5045328 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G14980:three_prime_UTR:7 | 119 | Chr3: 5039812-5039930 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:6 | 606 | Chr3: 5039812-5040417 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:5 | 576 | Chr3: 5039825-5040400 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:2 | 202 | Chr3: 5040465-5040666 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:1 | 284 | Chr3: 5040870-5041153 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:4 | 105 | Chr3: 5039826-5039930 | Arabidopsis thaliana |
AT3G14980:three_prime_UTR:3 | 39 | Chr3: 5039892-5039930 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
IDM1_ARATH | function | Histone H3 acetyltransferase that binds methylated DNA at chromatin sites lacking histone H3K4 di- or trimethylation and catalyzes H3K18 and H3K23 acetylation (PubMed:22700931, PubMed:22733760). Prevents the transcriptional silencing of transgenes and of some endogenous genes (PubMed:22700931, PubMed:22733760). Requires the presence of IDM2 for efficient H3K18 acetylation, but not for H3K23 acetylation (PubMed:25002145). |
IDM1_ARATH | subcellular location | Colocalizes with IDM2 within nucleoplasmic and nucleolar foci. |
IDM1_ARATH | tissue specificity | Expressed in cotyledons and hypocotyls in young seedlings. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
nucleus | ECO |
molecular function | |
histone acetyltransferase activity | ECO |
histone binding | ECO |
double-stranded methylated DNA binding | ECO |
metal ion binding | ECO |
biological process | |
gene silencing by siRNA-directed DNA methylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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