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Gene : ECT2 A. thaliana

DB identifier  ? AT3G13460 Secondary Identifier  ? locus:2092815
Name  ? evolutionarily conserved C-terminal region 2 Brief Description  evolutionarily conserved C-terminal region 2
TAIR Computational Description  evolutionarily conserved C-terminal region 2;(source:Araport11)
TAIR Curator Summary  Physically interacts with CIPK1. ECT2 regulates the mRNA levels of the roteasome regulator PTRE1 and of several 20S proteasome subunits, resulting in enhanced 26S proteasome activity. YTHDF protein which togeteher with ECT3 and ECT4 is involved in cell proliferation during plant organogenesis.
TAIR Short Description  evolutionarily conserved C-terminal region 2
TAIR Aliases  ECT2

7 Gene Rifs

1 Organism

26 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4030  
Location: Chr3:4384563-4388592 reverse strand

Gene models - ECT2 AT3G13460

? Gene models

Transcripts: 4  Exons: 36  Introns: 32 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
F4JDC5_ARATH F4JDC3_ARATH F4JDC2_ARATH function Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability. M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in mRNA stability and processing.
ECT2_ARATH function Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability (Probable) (PubMed:29618631, PubMed:29716990). M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in mRNA stability and processing (Probable) (PubMed:29618631, PubMed:29716990). Binds preferentially in the 3'UTRs of target genes (PubMed:29716990). May play dual roles in regulating 3'UTR processing in the nucleus and facilitating mRNA stability in the cytoplasm (PubMed:29716990). Required for the correct timing of leaf formation and normal leaf morphology (PubMed:29643069). Functions redundantly with ECT3 (PubMed:29643069). Required for proper trichome branching and morphology (PubMed:29618631, PubMed:29643069, PubMed:29716990). Controls trichome morphology by binding transcripts related to trichome morphogenesis and affecting their stability (PubMed:29618631, PubMed:29716990).
F4JDC5_ARATH F4JDC3_ARATH F4JDC2_ARATH similarity Belongs to the YTHDF family.
ECT2_ARATH subcellular location Localizes to cytoplasmic foci upon drought stress (PubMed:29643069). Relocates to cytoplasmic stress granules upon heat stress (PubMed:29618631).
ECT2_ARATH tissue specificity Expressed in the shoot apex, at the sites of leaf formation, and in emerging leaves (PubMed:29643069). Highly expressed in rapidly developing tissues (PubMed:29716990).

4 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
mRNA binding  ? ECO  
biological process
No terms in this category.

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets