External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 42, Exons: 19, Five Prime UTRs: 8, Gene: 1, mRNAs: 6, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G13060:CDS:4 | 12 | Chr3: 4181123-4181134 | Arabidopsis thaliana |
AT3G13060:CDS:5 | 178 | Chr3: 4181222-4181399 | Arabidopsis thaliana |
AT3G13060:CDS:6 | 77 | Chr3: 4181626-4181702 | Arabidopsis thaliana |
AT3G13060:CDS:7 | 474 | Chr3: 4181784-4182257 | Arabidopsis thaliana |
AT3G13060:CDS:8 | 546 | Chr3: 4182368-4182913 | Arabidopsis thaliana |
AT3G13060:CDS:10 | 213 | Chr3: 4182995-4183207 | Arabidopsis thaliana |
AT3G13060:CDS:12 | 339 | Chr3: 4183294-4183632 | Arabidopsis thaliana |
AT3G13060:CDS:2 | 48 | Chr3: 4181087-4181134 | Arabidopsis thaliana |
AT3G13060:CDS:5.1 | 178 | Chr3: 4181222-4181399 | Arabidopsis thaliana |
AT3G13060:CDS:6.1 | 77 | Chr3: 4181626-4181702 | Arabidopsis thaliana |
AT3G13060:CDS:7.1 | 474 | Chr3: 4181784-4182257 | Arabidopsis thaliana |
AT3G13060:CDS:8.1 | 546 | Chr3: 4182368-4182913 | Arabidopsis thaliana |
AT3G13060:CDS:10.1 | 213 | Chr3: 4182995-4183207 | Arabidopsis thaliana |
AT3G13060:CDS:12.1 | 339 | Chr3: 4183294-4183632 | Arabidopsis thaliana |
AT3G13060:CDS:1 | 40 | Chr3: 4180625-4180664 | Arabidopsis thaliana |
AT3G13060:CDS:3 | 38 | Chr3: 4181097-4181134 | Arabidopsis thaliana |
AT3G13060:CDS:5.2 | 178 | Chr3: 4181222-4181399 | Arabidopsis thaliana |
AT3G13060:CDS:6.2 | 77 | Chr3: 4181626-4181702 | Arabidopsis thaliana |
AT3G13060:CDS:7.2 | 474 | Chr3: 4181784-4182257 | Arabidopsis thaliana |
AT3G13060:CDS:8.2 | 546 | Chr3: 4182368-4182913 | Arabidopsis thaliana |
AT3G13060:CDS:10.2 | 213 | Chr3: 4182995-4183207 | Arabidopsis thaliana |
AT3G13060:CDS:12.2 | 339 | Chr3: 4183294-4183632 | Arabidopsis thaliana |
AT3G13060:CDS:1.1 | 40 | Chr3: 4180625-4180664 | Arabidopsis thaliana |
AT3G13060:CDS:3.1 | 38 | Chr3: 4181097-4181134 | Arabidopsis thaliana |
AT3G13060:CDS:5.3 | 178 | Chr3: 4181222-4181399 | Arabidopsis thaliana |
AT3G13060:CDS:6.3 | 77 | Chr3: 4181626-4181702 | Arabidopsis thaliana |
AT3G13060:CDS:7.3 | 474 | Chr3: 4181784-4182257 | Arabidopsis thaliana |
AT3G13060:CDS:9 | 558 | Chr3: 4182368-4182925 | Arabidopsis thaliana |
AT3G13060:CDS:1.2 | 40 | Chr3: 4180625-4180664 | Arabidopsis thaliana |
AT3G13060:CDS:3.2 | 38 | Chr3: 4181097-4181134 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G13060:exon:1 | 204 | Chr3: 4180154-4180357 | Arabidopsis thaliana |
AT3G13060:exon:6 | 201 | Chr3: 4180621-4180821 | Arabidopsis thaliana |
AT3G13060:exon:2 | 195 | Chr3: 4180163-4180357 | Arabidopsis thaliana |
AT3G13060:exon:7 | 514 | Chr3: 4180621-4181134 | Arabidopsis thaliana |
AT3G13060:exon:3 | 310 | Chr3: 4180355-4180664 | Arabidopsis thaliana |
AT3G13060:exon:17 | 682 | Chr3: 4183294-4183975 | Arabidopsis thaliana |
AT3G13060:exon:13 | 558 | Chr3: 4182368-4182925 | Arabidopsis thaliana |
AT3G13060:exon:4 | 290 | Chr3: 4180375-4180664 | Arabidopsis thaliana |
AT3G13060:exon:15 | 981 | Chr3: 4182995-4183975 | Arabidopsis thaliana |
AT3G13060:exon:5 | 434 | Chr3: 4180388-4180821 | Arabidopsis thaliana |
AT3G13060:exon:8 | 38 | Chr3: 4181097-4181134 | Arabidopsis thaliana |
AT3G13060:exon:9 | 178 | Chr3: 4181222-4181399 | Arabidopsis thaliana |
AT3G13060:exon:10 | 77 | Chr3: 4181626-4181702 | Arabidopsis thaliana |
AT3G13060:exon:11 | 474 | Chr3: 4181784-4182257 | Arabidopsis thaliana |
AT3G13060:exon:12 | 546 | Chr3: 4182368-4182913 | Arabidopsis thaliana |
AT3G13060:exon:14 | 213 | Chr3: 4182995-4183207 | Arabidopsis thaliana |
AT3G13060:exon:16 | 339 | Chr3: 4183294-4183632 | Arabidopsis thaliana |
AT3G13061:exon:2 | 530 | Chr3: 4183099-4183628 | Arabidopsis thaliana |
AT3G13061:exon:1 | 157 | Chr3: 4183728-4183884 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G13060:five_prime_UTR:1 | 204 | Chr3: 4180154-4180357 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:6 | 201 | Chr3: 4180621-4180821 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:2 | 195 | Chr3: 4180163-4180357 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:7 | 466 | Chr3: 4180621-4181086 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:3 | 270 | Chr3: 4180355-4180624 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:4 | 250 | Chr3: 4180375-4180624 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:5 | 434 | Chr3: 4180388-4180821 | Arabidopsis thaliana |
AT3G13060:five_prime_UTR:8 | 26 | Chr3: 4181097-4181122 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G13061 | locus:4515103060 | AT3G13061 | 786 | Chr3: 4183099-4183884 | A. thaliana | Natural antisense transcript overlaps with AT3G13060;(source:Araport11) | NULL | other RNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G13060.3 | 2270 | Chr3: 4180154-4183632 |
AT3G13060.4 | 2536 | Chr3: 4180163-4183632 |
AT3G13060.2 | 2518 | Chr3: 4180355-4183975 |
AT3G13060.5 | 1615 | Chr3: 4180375-4182925 |
AT3G13060.1 | 2584 | Chr3: 4180375-4183975 |
AT3G13060.6 | 2299 | Chr3: 4180388-4183632 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G13060:three_prime_UTR:2 | 343 | Chr3: 4183633-4183975 | Arabidopsis thaliana |
AT3G13060:three_prime_UTR:1 | 678 | Chr3: 4183298-4183975 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1I9LTL9_ARATH F4JB30_ARATH A0A384LL64_ARATH A0A1I9LTL8_ARATH A0A1I9LTL7_ARATH | function | Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability. M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in mRNA stability and processing. |
A0A1I9LTL9_ARATH F4JB30_ARATH A0A384LL64_ARATH A0A1I9LTL8_ARATH A0A1I9LTL7_ARATH | similarity | Belongs to the YTHDF family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
N6-methyladenosine-containing RNA reader activity | ECO |
RNA binding | ECO |
biological process | |
regulation of mRNA stability | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...