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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12340:CDS:13 | 82 | Chr3: 3925720-3925801 | Arabidopsis thaliana |
AT3G12340:CDS:12 | 49 | Chr3: 3925921-3925969 | Arabidopsis thaliana |
AT3G12340:CDS:11 | 42 | Chr3: 3926060-3926101 | Arabidopsis thaliana |
AT3G12340:CDS:10 | 88 | Chr3: 3926215-3926302 | Arabidopsis thaliana |
AT3G12340:CDS:9 | 124 | Chr3: 3926414-3926537 | Arabidopsis thaliana |
AT3G12340:CDS:8 | 141 | Chr3: 3926936-3927076 | Arabidopsis thaliana |
AT3G12340:CDS:7 | 180 | Chr3: 3927459-3927638 | Arabidopsis thaliana |
AT3G12340:CDS:6 | 325 | Chr3: 3927708-3928032 | Arabidopsis thaliana |
AT3G12340:CDS:4 | 140 | Chr3: 3928489-3928628 | Arabidopsis thaliana |
AT3G12340:CDS:3 | 236 | Chr3: 3928713-3928948 | Arabidopsis thaliana |
AT3G12340:CDS:2 | 80 | Chr3: 3929131-3929210 | Arabidopsis thaliana |
AT3G12340:CDS:1 | 13 | Chr3: 3929334-3929346 | Arabidopsis thaliana |
AT3G12340:CDS:13.1 | 82 | Chr3: 3925720-3925801 | Arabidopsis thaliana |
AT3G12340:CDS:12.1 | 49 | Chr3: 3925921-3925969 | Arabidopsis thaliana |
AT3G12340:CDS:11.1 | 42 | Chr3: 3926060-3926101 | Arabidopsis thaliana |
AT3G12340:CDS:10.1 | 88 | Chr3: 3926215-3926302 | Arabidopsis thaliana |
AT3G12340:CDS:9.1 | 124 | Chr3: 3926414-3926537 | Arabidopsis thaliana |
AT3G12340:CDS:8.1 | 141 | Chr3: 3926936-3927076 | Arabidopsis thaliana |
AT3G12340:CDS:7.1 | 180 | Chr3: 3927459-3927638 | Arabidopsis thaliana |
AT3G12340:CDS:6.1 | 325 | Chr3: 3927708-3928032 | Arabidopsis thaliana |
AT3G12340:CDS:5 | 106 | Chr3: 3928489-3928594 | Arabidopsis thaliana |
AT3G12340:CDS:13.2 | 82 | Chr3: 3925720-3925801 | Arabidopsis thaliana |
AT3G12340:CDS:12.2 | 49 | Chr3: 3925921-3925969 | Arabidopsis thaliana |
AT3G12340:CDS:11.2 | 42 | Chr3: 3926060-3926101 | Arabidopsis thaliana |
AT3G12340:CDS:10.2 | 88 | Chr3: 3926215-3926302 | Arabidopsis thaliana |
AT3G12340:CDS:9.2 | 124 | Chr3: 3926414-3926537 | Arabidopsis thaliana |
AT3G12340:CDS:8.2 | 141 | Chr3: 3926936-3927076 | Arabidopsis thaliana |
AT3G12340:CDS:7.2 | 180 | Chr3: 3927459-3927638 | Arabidopsis thaliana |
AT3G12340:CDS:6.2 | 325 | Chr3: 3927708-3928032 | Arabidopsis thaliana |
AT3G12340:CDS:5.1 | 106 | Chr3: 3928489-3928594 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12320:exon:10 | 364 | Chr3: 3925139-3925502 | Arabidopsis thaliana |
AT3G12340:exon:17 | 304 | Chr3: 3925498-3925801 | Arabidopsis thaliana |
AT3G12340:exon:6 | 236 | Chr3: 3928713-3928948 | Arabidopsis thaliana |
AT3G12340:exon:3 | 80 | Chr3: 3929131-3929210 | Arabidopsis thaliana |
AT3G12340:exon:1 | 140 | Chr3: 3929334-3929473 | Arabidopsis thaliana |
AT3G12340:exon:16 | 297 | Chr3: 3925505-3925801 | Arabidopsis thaliana |
AT3G12340:exon:5 | 396 | Chr3: 3928713-3929108 | Arabidopsis thaliana |
AT3G12340:exon:15 | 291 | Chr3: 3925511-3925801 | Arabidopsis thaliana |
AT3G12340:exon:14 | 49 | Chr3: 3925921-3925969 | Arabidopsis thaliana |
AT3G12340:exon:13 | 42 | Chr3: 3926060-3926101 | Arabidopsis thaliana |
AT3G12340:exon:12 | 88 | Chr3: 3926215-3926302 | Arabidopsis thaliana |
AT3G12340:exon:11 | 124 | Chr3: 3926414-3926537 | Arabidopsis thaliana |
AT3G12340:exon:10 | 141 | Chr3: 3926936-3927076 | Arabidopsis thaliana |
AT3G12340:exon:9 | 180 | Chr3: 3927459-3927638 | Arabidopsis thaliana |
AT3G12340:exon:8 | 325 | Chr3: 3927708-3928032 | Arabidopsis thaliana |
AT3G12340:exon:7 | 140 | Chr3: 3928489-3928628 | Arabidopsis thaliana |
AT3G12340:exon:4 | 498 | Chr3: 3928713-3929210 | Arabidopsis thaliana |
AT3G12340:exon:2 | 93 | Chr3: 3929334-3929426 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12340:five_prime_UTR:1 | 127 | Chr3: 3929347-3929473 | Arabidopsis thaliana |
AT3G12340:five_prime_UTR:4 | 396 | Chr3: 3928713-3929108 | Arabidopsis thaliana |
AT3G12340:five_prime_UTR:5 | 34 | Chr3: 3928595-3928628 | Arabidopsis thaliana |
AT3G12340:five_prime_UTR:3 | 498 | Chr3: 3928713-3929210 | Arabidopsis thaliana |
AT3G12340:five_prime_UTR:2 | 93 | Chr3: 3929334-3929426 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G12320 | locus:2082264 | AT3G12320 | 1988 | Chr3: 3923515-3925502 | A. thaliana | hypothetical protein;(source:Araport11) | Member of a small gene family. Appears to be clock regulated.Somewhat redundant with LNK1/2 though more like LNK4 in having affects on biomass accumulation and phototrophism. | NULL | LNK3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G12320.1 | 1475 | Chr3: 3923515-3925502 |
AT3G12340.1 | 1849 | Chr3: 3925498-3929473 |
AT3G12340.2 | 1782 | Chr3: 3925505-3929108 |
AT3G12340.3 | 1971 | Chr3: 3925511-3929426 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12320:three_prime_UTR:3 | 240 | Chr3: 3925263-3925502 | Arabidopsis thaliana |
AT3G12340:three_prime_UTR:3 | 222 | Chr3: 3925498-3925719 | Arabidopsis thaliana |
AT3G12340:three_prime_UTR:2 | 215 | Chr3: 3925505-3925719 | Arabidopsis thaliana |
AT3G12340:three_prime_UTR:1 | 209 | Chr3: 3925511-3925719 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
FKB43_ARATH | function | PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). |
FKB43_ARATH | similarity | Belongs to the FKBP-type PPIase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
peptidyl-prolyl cis-trans isomerase activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...