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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12020:CDS:1 | 239 | Chr3: 3827016-3827254 | Arabidopsis thaliana |
AT3G12020:CDS:2 | 98 | Chr3: 3827340-3827437 | Arabidopsis thaliana |
AT3G12020:CDS:3 | 90 | Chr3: 3827688-3827777 | Arabidopsis thaliana |
AT3G12020:CDS:4 | 53 | Chr3: 3828087-3828139 | Arabidopsis thaliana |
AT3G12020:CDS:5 | 66 | Chr3: 3828341-3828406 | Arabidopsis thaliana |
AT3G12020:CDS:6 | 54 | Chr3: 3828483-3828536 | Arabidopsis thaliana |
AT3G12020:CDS:7 | 60 | Chr3: 3828671-3828730 | Arabidopsis thaliana |
AT3G12020:CDS:8 | 79 | Chr3: 3829103-3829181 | Arabidopsis thaliana |
AT3G12020:CDS:9 | 68 | Chr3: 3829502-3829569 | Arabidopsis thaliana |
AT3G12020:CDS:10 | 63 | Chr3: 3829941-3830003 | Arabidopsis thaliana |
AT3G12020:CDS:11 | 105 | Chr3: 3830129-3830233 | Arabidopsis thaliana |
AT3G12020:CDS:12 | 105 | Chr3: 3830637-3830741 | Arabidopsis thaliana |
AT3G12020:CDS:13 | 108 | Chr3: 3830856-3830963 | Arabidopsis thaliana |
AT3G12020:CDS:14 | 147 | Chr3: 3831044-3831190 | Arabidopsis thaliana |
AT3G12020:CDS:15 | 183 | Chr3: 3831469-3831651 | Arabidopsis thaliana |
AT3G12020:CDS:16 | 156 | Chr3: 3831804-3831959 | Arabidopsis thaliana |
AT3G12020:CDS:17 | 204 | Chr3: 3832203-3832406 | Arabidopsis thaliana |
AT3G12020:CDS:18 | 141 | Chr3: 3832484-3832624 | Arabidopsis thaliana |
AT3G12020:CDS:19 | 126 | Chr3: 3832713-3832838 | Arabidopsis thaliana |
AT3G12020:CDS:20 | 51 | Chr3: 3832921-3832971 | Arabidopsis thaliana |
AT3G12020:CDS:22 | 48 | Chr3: 3833209-3833256 | Arabidopsis thaliana |
AT3G12020:CDS:23 | 78 | Chr3: 3833375-3833452 | Arabidopsis thaliana |
AT3G12020:CDS:24 | 576 | Chr3: 3833571-3834146 | Arabidopsis thaliana |
AT3G12020:CDS:1.1 | 239 | Chr3: 3827016-3827254 | Arabidopsis thaliana |
AT3G12020:CDS:2.1 | 98 | Chr3: 3827340-3827437 | Arabidopsis thaliana |
AT3G12020:CDS:3.1 | 90 | Chr3: 3827688-3827777 | Arabidopsis thaliana |
AT3G12020:CDS:4.1 | 53 | Chr3: 3828087-3828139 | Arabidopsis thaliana |
AT3G12020:CDS:5.1 | 66 | Chr3: 3828341-3828406 | Arabidopsis thaliana |
AT3G12020:CDS:6.1 | 54 | Chr3: 3828483-3828536 | Arabidopsis thaliana |
AT3G12020:CDS:7.1 | 60 | Chr3: 3828671-3828730 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12020:exon:1 | 431 | Chr3: 3825980-3826410 | Arabidopsis thaliana |
AT3G12020:exon:29 | 1563 | Chr3: 3833571-3835133 | Arabidopsis thaliana |
AT3G12020:exon:2 | 263 | Chr3: 3826148-3826410 | Arabidopsis thaliana |
AT3G12020:exon:3 | 194 | Chr3: 3826500-3826693 | Arabidopsis thaliana |
AT3G12020:exon:5 | 267 | Chr3: 3826988-3827254 | Arabidopsis thaliana |
AT3G12020:exon:25 | 336 | Chr3: 3832921-3833256 | Arabidopsis thaliana |
AT3G12020:exon:28 | 748 | Chr3: 3833571-3834318 | Arabidopsis thaliana |
AT3G12020:exon:4 | 359 | Chr3: 3826896-3827254 | Arabidopsis thaliana |
AT3G12020:exon:6 | 98 | Chr3: 3827340-3827437 | Arabidopsis thaliana |
AT3G12020:exon:7 | 90 | Chr3: 3827688-3827777 | Arabidopsis thaliana |
AT3G12020:exon:8 | 53 | Chr3: 3828087-3828139 | Arabidopsis thaliana |
AT3G12020:exon:9 | 66 | Chr3: 3828341-3828406 | Arabidopsis thaliana |
AT3G12020:exon:10 | 54 | Chr3: 3828483-3828536 | Arabidopsis thaliana |
AT3G12020:exon:11 | 60 | Chr3: 3828671-3828730 | Arabidopsis thaliana |
AT3G12020:exon:12 | 79 | Chr3: 3829103-3829181 | Arabidopsis thaliana |
AT3G12020:exon:13 | 68 | Chr3: 3829502-3829569 | Arabidopsis thaliana |
AT3G12020:exon:14 | 63 | Chr3: 3829941-3830003 | Arabidopsis thaliana |
AT3G12020:exon:15 | 105 | Chr3: 3830129-3830233 | Arabidopsis thaliana |
AT3G12020:exon:16 | 105 | Chr3: 3830637-3830741 | Arabidopsis thaliana |
AT3G12020:exon:17 | 108 | Chr3: 3830856-3830963 | Arabidopsis thaliana |
AT3G12020:exon:18 | 147 | Chr3: 3831044-3831190 | Arabidopsis thaliana |
AT3G12020:exon:19 | 183 | Chr3: 3831469-3831651 | Arabidopsis thaliana |
AT3G12020:exon:20 | 156 | Chr3: 3831804-3831959 | Arabidopsis thaliana |
AT3G12020:exon:21 | 204 | Chr3: 3832203-3832406 | Arabidopsis thaliana |
AT3G12020:exon:22 | 141 | Chr3: 3832484-3832624 | Arabidopsis thaliana |
AT3G12020:exon:23 | 126 | Chr3: 3832713-3832838 | Arabidopsis thaliana |
AT3G12020:exon:24 | 51 | Chr3: 3832921-3832971 | Arabidopsis thaliana |
AT3G12020:exon:26 | 48 | Chr3: 3833209-3833256 | Arabidopsis thaliana |
AT3G12020:exon:27 | 78 | Chr3: 3833375-3833452 | Arabidopsis thaliana |
AT3G12020:exon:30 | 1576 | Chr3: 3833571-3835146 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12020:five_prime_UTR:1 | 431 | Chr3: 3825980-3826410 | Arabidopsis thaliana |
AT3G12020:five_prime_UTR:2 | 263 | Chr3: 3826148-3826410 | Arabidopsis thaliana |
AT3G12020:five_prime_UTR:3 | 194 | Chr3: 3826500-3826693 | Arabidopsis thaliana |
AT3G12020:five_prime_UTR:5 | 28 | Chr3: 3826988-3827015 | Arabidopsis thaliana |
AT3G12020:five_prime_UTR:4 | 120 | Chr3: 3826896-3827015 | Arabidopsis thaliana |
AT3G12030:five_prime_UTR:1 | 52 | Chr3: 3835056-3835107 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G12030 | locus:2088634 | AT3G12030 | 747 | Chr3: 3834361-3835107 | A. thaliana | transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane);(source:Araport11) | NULL | Protein of unknown function DUF106, transmembrane | ||
AT3G12040 | locus:2088639 | AT3G12040 | 1721 | Chr3: 3835129-3836849 | A. thaliana | DNA-3-methyladenine glycosylase (MAG);(source:Araport11) | Encodes a 3-methyladenine-DNA glycosylase. Arabdiopsis cDNA complements the methyl methanesulfonate-sensitive phenotype of an Escherichia coli double mutant deficient in 3-methyladenine glycosylases (DNA-3-methyladenine glycosidases I and II, EC 3.2.2.20 and 3.2.2.21, respectively, encoded by tag and alkA). | DNA-3-methyladenine glycosylase (MAG) |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G12020.1 | 4344 | Chr3: 3825980-3835133 |
AT3G12020.3 | 3598 | Chr3: 3826148-3834318 |
AT3G12020.2 | 3529 | Chr3: 3826500-3834318 |
AT3G12020.4 | 4018 | Chr3: 3826896-3835146 |
AT3G12030.1 | 747 | Chr3: 3834361-3835107 |
AT3G12040.2 | 1071 | Chr3: 3835129-3836834 |
AT3G12040.1 | 1053 | Chr3: 3835129-3836849 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12020:three_prime_UTR:2 | 987 | Chr3: 3834147-3835133 | Arabidopsis thaliana |
AT3G12020:three_prime_UTR:1 | 172 | Chr3: 3834147-3834318 | Arabidopsis thaliana |
AT3G12020:three_prime_UTR:3 | 1000 | Chr3: 3834147-3835146 | Arabidopsis thaliana |
AT3G12030:three_prime_UTR:1 | 104 | Chr3: 3834361-3834464 | Arabidopsis thaliana |
AT3G12040:three_prime_UTR:2 | 387 | Chr3: 3835129-3835515 | Arabidopsis thaliana |
AT3G12040:three_prime_UTR:3 | 220 | Chr3: 3835129-3835348 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4J8L2_ARATH | similarity | Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. |
KN7K_ARATH | similarity | Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIN-7 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
microtubule | ECO |
chloroplast | ECO |
kinesin complex | ECO |
molecular function | |
microtubule motor activity | ECO |
microtubule binding | ECO |
ATP hydrolysis activity | ECO |
ATP binding | ECO |
biological process | |
microtubule-based movement | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...