External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 3, CDSs: 78, Exons: 31, Five Prime UTRs: 2, Genes: 2, mRNAs: 6, Three Prime UTRs: 9
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G02455.1 | 351 | Chr3: 3641635-3641985 |
AT3G02455.2 | 257 | Chr3: 3643395-3643651 |
AT3G02455.3 | 392 | Chr3: 3644273-3644664 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11560:CDS:1 | 41 | Chr3: 3639553-3639593 | Arabidopsis thaliana |
AT3G11560:CDS:2 | 436 | Chr3: 3639873-3640308 | Arabidopsis thaliana |
AT3G11560:CDS:3 | 92 | Chr3: 3640402-3640493 | Arabidopsis thaliana |
AT3G11560:CDS:4 | 165 | Chr3: 3640924-3641088 | Arabidopsis thaliana |
AT3G11560:CDS:5 | 394 | Chr3: 3641218-3641611 | Arabidopsis thaliana |
AT3G11560:CDS:6 | 119 | Chr3: 3641965-3642083 | Arabidopsis thaliana |
AT3G11560:CDS:7 | 73 | Chr3: 3642187-3642259 | Arabidopsis thaliana |
AT3G11560:CDS:8 | 227 | Chr3: 3642337-3642563 | Arabidopsis thaliana |
AT3G11560:CDS:9 | 45 | Chr3: 3642655-3642699 | Arabidopsis thaliana |
AT3G11560:CDS:10 | 43 | Chr3: 3643048-3643090 | Arabidopsis thaliana |
AT3G11560:CDS:11 | 192 | Chr3: 3643226-3643417 | Arabidopsis thaliana |
AT3G11560:CDS:13 | 104 | Chr3: 3643631-3643734 | Arabidopsis thaliana |
AT3G11560:CDS:14 | 67 | Chr3: 3643859-3643925 | Arabidopsis thaliana |
AT3G11560:CDS:15 | 150 | Chr3: 3644146-3644295 | Arabidopsis thaliana |
AT3G11560:CDS:16 | 123 | Chr3: 3644643-3644765 | Arabidopsis thaliana |
AT3G11560:CDS:17 | 171 | Chr3: 3644872-3645042 | Arabidopsis thaliana |
AT3G11560:CDS:18 | 60 | Chr3: 3645247-3645306 | Arabidopsis thaliana |
AT3G11560:CDS:19 | 117 | Chr3: 3645390-3645506 | Arabidopsis thaliana |
AT3G11560:CDS:1.1 | 41 | Chr3: 3639553-3639593 | Arabidopsis thaliana |
AT3G11560:CDS:2.1 | 436 | Chr3: 3639873-3640308 | Arabidopsis thaliana |
AT3G11560:CDS:3.1 | 92 | Chr3: 3640402-3640493 | Arabidopsis thaliana |
AT3G11560:CDS:4.1 | 165 | Chr3: 3640924-3641088 | Arabidopsis thaliana |
AT3G11560:CDS:5.1 | 394 | Chr3: 3641218-3641611 | Arabidopsis thaliana |
AT3G11560:CDS:6.1 | 119 | Chr3: 3641965-3642083 | Arabidopsis thaliana |
AT3G11560:CDS:7.1 | 73 | Chr3: 3642187-3642259 | Arabidopsis thaliana |
AT3G11560:CDS:8.1 | 227 | Chr3: 3642337-3642563 | Arabidopsis thaliana |
AT3G11560:CDS:9.1 | 45 | Chr3: 3642655-3642699 | Arabidopsis thaliana |
AT3G11560:CDS:10.1 | 43 | Chr3: 3643048-3643090 | Arabidopsis thaliana |
AT3G11560:CDS:12 | 225 | Chr3: 3643226-3643450 | Arabidopsis thaliana |
AT3G11560:CDS:1.2 | 41 | Chr3: 3639553-3639593 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11560:exon:1 | 182 | Chr3: 3639412-3639593 | Arabidopsis thaliana |
AT3G11560:exon:23 | 423 | Chr3: 3645390-3645812 | Arabidopsis thaliana |
AT3G11560:exon:14 | 426 | Chr3: 3643226-3643651 | Arabidopsis thaliana |
AT3G11560:exon:13 | 334 | Chr3: 3643226-3643559 | Arabidopsis thaliana |
AT3G11560:exon:15 | 23 | Chr3: 3643631-3643653 | Arabidopsis thaliana |
AT3G11560:exon:25 | 232 | Chr3: 3645794-3646025 | Arabidopsis thaliana |
AT3G11560:exon:2 | 159 | Chr3: 3639435-3639593 | Arabidopsis thaliana |
AT3G11560:exon:3 | 436 | Chr3: 3639873-3640308 | Arabidopsis thaliana |
AT3G11560:exon:4 | 92 | Chr3: 3640402-3640493 | Arabidopsis thaliana |
AT3G11560:exon:5 | 165 | Chr3: 3640924-3641088 | Arabidopsis thaliana |
AT3G11560:exon:6 | 394 | Chr3: 3641218-3641611 | Arabidopsis thaliana |
AT3G11560:exon:7 | 119 | Chr3: 3641965-3642083 | Arabidopsis thaliana |
AT3G11560:exon:8 | 73 | Chr3: 3642187-3642259 | Arabidopsis thaliana |
AT3G11560:exon:9 | 227 | Chr3: 3642337-3642563 | Arabidopsis thaliana |
AT3G11560:exon:10 | 45 | Chr3: 3642655-3642699 | Arabidopsis thaliana |
AT3G11560:exon:11 | 43 | Chr3: 3643048-3643090 | Arabidopsis thaliana |
AT3G11560:exon:12 | 192 | Chr3: 3643226-3643417 | Arabidopsis thaliana |
AT3G11560:exon:16 | 104 | Chr3: 3643631-3643734 | Arabidopsis thaliana |
AT3G11560:exon:17 | 67 | Chr3: 3643859-3643925 | Arabidopsis thaliana |
AT3G11560:exon:18 | 150 | Chr3: 3644146-3644295 | Arabidopsis thaliana |
AT3G11560:exon:19 | 123 | Chr3: 3644643-3644765 | Arabidopsis thaliana |
AT3G11560:exon:20 | 171 | Chr3: 3644872-3645042 | Arabidopsis thaliana |
AT3G11560:exon:21 | 60 | Chr3: 3645247-3645306 | Arabidopsis thaliana |
AT3G11560:exon:22 | 319 | Chr3: 3645390-3645708 | Arabidopsis thaliana |
AT3G11560:exon:24 | 274 | Chr3: 3645788-3646061 | Arabidopsis thaliana |
AT3G02455:exon:3 | 351 | Chr3: 3641635-3641985 | Arabidopsis thaliana |
AT3G02455:exon:2 | 257 | Chr3: 3643395-3643651 | Arabidopsis thaliana |
AT3G02455:exon:1 | 392 | Chr3: 3644273-3644664 | Arabidopsis thaliana |
AT3G11570:exon:5 | 401 | Chr3: 3645022-3645422 | Arabidopsis thaliana |
AT3G11570:exon:4 | 334 | Chr3: 3645534-3645867 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11560:five_prime_UTR:1 | 141 | Chr3: 3639412-3639552 | Arabidopsis thaliana |
AT3G11560:five_prime_UTR:2 | 118 | Chr3: 3639435-3639552 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G02455 | AT3G02455 | 3030 | Chr3: 3641635-3644664 | A. thaliana | Natural antisense transcript overlaps with AT3G11560;(source:Araport11) | NULL | ||||
AT3G11570 | locus:2080767 | TBL8 | TRICHOME BIREFRINGENCE-LIKE 8 | 2521 | Chr3: 3645022-3647542 | A. thaliana | TRICHOME BIREFRINGENCE-LIKE 8;(source:Araport11) | Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | TRICHOME BIREFRINGENCE-LIKE 8 | TBL8 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G11560.2 | 3066 | Chr3: 3639412-3645812 |
AT3G11560.1 | 2179 | Chr3: 3639435-3643651 |
AT3G11560.5 | 2110 | Chr3: 3639435-3643653 |
AT3G11560.4 | 3171 | Chr3: 3639435-3646025 |
AT3G11560.3 | 3213 | Chr3: 3639435-3646061 |
AT3G11570.1 | 1905 | Chr3: 3645022-3647542 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11560:three_prime_UTR:5 | 306 | Chr3: 3645507-3645812 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:2 | 201 | Chr3: 3643451-3643651 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:1 | 109 | Chr3: 3643451-3643559 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:3 | 23 | Chr3: 3643631-3643653 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:7 | 232 | Chr3: 3645794-3646025 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:4 | 202 | Chr3: 3645507-3645708 | Arabidopsis thaliana |
AT3G11560:three_prime_UTR:6 | 274 | Chr3: 3645788-3646061 | Arabidopsis thaliana |
AT3G11570:three_prime_UTR:2 | 401 | Chr3: 3645022-3645422 | Arabidopsis thaliana |
AT3G11570:three_prime_UTR:1 | 6 | Chr3: 3645534-3645539 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
chloroplast envelope | ECO |
chloroplast | ECO |
mitochondrial inner membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...