External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G10880:CDS:3 | 846 | Chr3: 3406286-3407131 | Arabidopsis thaliana |
AT3G10880:CDS:1 | 91 | Chr3: 3406092-3406182 | Arabidopsis thaliana |
AT3G10880:CDS:2 | 869 | Chr3: 3406263-3407131 | Arabidopsis thaliana |
AT3G10880:CDS:3.1 | 846 | Chr3: 3406286-3407131 | Arabidopsis thaliana |
AT3G10880:CDS:1.1 | 91 | Chr3: 3406092-3406182 | Arabidopsis thaliana |
AT3G10880:CDS:2.1 | 869 | Chr3: 3406263-3407131 | Arabidopsis thaliana |
AT3G10890:CDS:4 | 385 | Chr3: 3407455-3407839 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G10880:exon:4 | 1358 | Chr3: 3406092-3407449 | Arabidopsis thaliana |
AT3G10880:exon:1 | 167 | Chr3: 3405800-3405966 | Arabidopsis thaliana |
AT3G10880:exon:5 | 908 | Chr3: 3406263-3407170 | Arabidopsis thaliana |
AT3G10880:exon:8 | 297 | Chr3: 3407625-3407921 | Arabidopsis thaliana |
AT3G10880:exon:7 | 1224 | Chr3: 3406274-3407497 | Arabidopsis thaliana |
AT3G10880:exon:2 | 152 | Chr3: 3405815-3405966 | Arabidopsis thaliana |
AT3G10880:exon:3 | 91 | Chr3: 3406092-3406182 | Arabidopsis thaliana |
AT3G10880:exon:6 | 1235 | Chr3: 3406263-3407497 | Arabidopsis thaliana |
AT3G10890:exon:4 | 508 | Chr3: 3407332-3407839 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G10880:five_prime_UTR:4 | 194 | Chr3: 3406092-3406285 | Arabidopsis thaliana |
AT3G10880:five_prime_UTR:1 | 167 | Chr3: 3405800-3405966 | Arabidopsis thaliana |
AT3G10880:five_prime_UTR:3 | 91 | Chr3: 3406092-3406182 | Arabidopsis thaliana |
AT3G10880:five_prime_UTR:5 | 12 | Chr3: 3406274-3406285 | Arabidopsis thaliana |
AT3G10880:five_prime_UTR:2 | 152 | Chr3: 3405815-3405966 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G10890 | locus:2103262 | AT3G10890 | 1669 | Chr3: 3407332-3409000 | A. thaliana | Glycosyl hydrolase superfamily protein;(source:Araport11) | Encodes an endo beta mannanase that is localized to the apoplast and involved in glutathione mediated cadmium tolerance. | Glycosyl hydrolase superfamily protein | MAN3, XCD1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G10880.2 | 1525 | Chr3: 3405800-3407449 |
AT3G10880.3 | 1463 | Chr3: 3405800-3407921 |
AT3G10880.4 | 1467 | Chr3: 3405815-3407497 |
AT3G10880.1 | 1478 | Chr3: 3405815-3407497 |
AT3G10890.1 | 1368 | Chr3: 3407332-3409000 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G10880:three_prime_UTR:2 | 318 | Chr3: 3407132-3407449 | Arabidopsis thaliana |
AT3G10880:three_prime_UTR:1 | 39 | Chr3: 3407132-3407170 | Arabidopsis thaliana |
AT3G10880:three_prime_UTR:4 | 297 | Chr3: 3407625-3407921 | Arabidopsis thaliana |
AT3G10880:three_prime_UTR:3 | 366 | Chr3: 3407132-3407497 | Arabidopsis thaliana |
AT3G10890:three_prime_UTR:1 | 123 | Chr3: 3407332-3407454 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...