External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
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- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09720:CDS:12 | 221 | Chr3: 2980483-2980703 | Arabidopsis thaliana |
AT3G09720:CDS:11 | 151 | Chr3: 2980817-2980967 | Arabidopsis thaliana |
AT3G09720:CDS:10 | 123 | Chr3: 2981071-2981193 | Arabidopsis thaliana |
AT3G09720:CDS:9 | 91 | Chr3: 2981269-2981359 | Arabidopsis thaliana |
AT3G09720:CDS:8 | 195 | Chr3: 2981461-2981655 | Arabidopsis thaliana |
AT3G09720:CDS:7 | 233 | Chr3: 2981742-2981974 | Arabidopsis thaliana |
AT3G09720:CDS:6 | 81 | Chr3: 2982066-2982146 | Arabidopsis thaliana |
AT3G09720:CDS:5 | 97 | Chr3: 2982295-2982391 | Arabidopsis thaliana |
AT3G09720:CDS:4 | 92 | Chr3: 2982573-2982664 | Arabidopsis thaliana |
AT3G09720:CDS:3 | 128 | Chr3: 2982754-2982881 | Arabidopsis thaliana |
AT3G09720:CDS:2 | 133 | Chr3: 2982965-2983097 | Arabidopsis thaliana |
AT3G09720:CDS:1 | 81 | Chr3: 2983188-2983268 | Arabidopsis thaliana |
AT3G09720:CDS:12.1 | 221 | Chr3: 2980483-2980703 | Arabidopsis thaliana |
AT3G09720:CDS:11.1 | 151 | Chr3: 2980817-2980967 | Arabidopsis thaliana |
AT3G09720:CDS:10.1 | 123 | Chr3: 2981071-2981193 | Arabidopsis thaliana |
AT3G09720:CDS:9.1 | 91 | Chr3: 2981269-2981359 | Arabidopsis thaliana |
AT3G09720:CDS:8.1 | 195 | Chr3: 2981461-2981655 | Arabidopsis thaliana |
AT3G09720:CDS:7.1 | 233 | Chr3: 2981742-2981974 | Arabidopsis thaliana |
AT3G09720:CDS:6.1 | 81 | Chr3: 2982066-2982146 | Arabidopsis thaliana |
AT3G09720:CDS:5.1 | 97 | Chr3: 2982295-2982391 | Arabidopsis thaliana |
AT3G09720:CDS:4.1 | 92 | Chr3: 2982573-2982664 | Arabidopsis thaliana |
AT3G09720:CDS:3.1 | 128 | Chr3: 2982754-2982881 | Arabidopsis thaliana |
AT3G09720:CDS:2.1 | 133 | Chr3: 2982965-2983097 | Arabidopsis thaliana |
AT3G09720:CDS:1.1 | 81 | Chr3: 2983188-2983268 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09710:exon:1 | 671 | Chr3: 2979114-2979784 | Arabidopsis thaliana |
AT3G09720:exon:15 | 932 | Chr3: 2979772-2980703 | Arabidopsis thaliana |
AT3G09720:exon:1 | 161 | Chr3: 2983458-2983618 | Arabidopsis thaliana |
AT3G09720:exon:14 | 483 | Chr3: 2980221-2980703 | Arabidopsis thaliana |
AT3G09720:exon:13 | 151 | Chr3: 2980817-2980967 | Arabidopsis thaliana |
AT3G09720:exon:12 | 123 | Chr3: 2981071-2981193 | Arabidopsis thaliana |
AT3G09720:exon:11 | 91 | Chr3: 2981269-2981359 | Arabidopsis thaliana |
AT3G09720:exon:10 | 195 | Chr3: 2981461-2981655 | Arabidopsis thaliana |
AT3G09720:exon:9 | 233 | Chr3: 2981742-2981974 | Arabidopsis thaliana |
AT3G09720:exon:8 | 81 | Chr3: 2982066-2982146 | Arabidopsis thaliana |
AT3G09720:exon:7 | 97 | Chr3: 2982295-2982391 | Arabidopsis thaliana |
AT3G09720:exon:6 | 92 | Chr3: 2982573-2982664 | Arabidopsis thaliana |
AT3G09720:exon:5 | 128 | Chr3: 2982754-2982881 | Arabidopsis thaliana |
AT3G09720:exon:4 | 133 | Chr3: 2982965-2983097 | Arabidopsis thaliana |
AT3G09720:exon:3 | 81 | Chr3: 2983188-2983268 | Arabidopsis thaliana |
AT3G09720:exon:2 | 190 | Chr3: 2983429-2983618 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09710:five_prime_UTR:1 | 671 | Chr3: 2979114-2979784 | Arabidopsis thaliana |
AT3G09720:five_prime_UTR:1 | 161 | Chr3: 2983458-2983618 | Arabidopsis thaliana |
AT3G09720:five_prime_UTR:2 | 190 | Chr3: 2983429-2983618 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G09710 | locus:2075024 | IQD1 | IQ-domain 1 | 3213 | Chr3: 2976572-2979784 | A. thaliana | IQ-domain 1;(source:Araport11) | Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.Member of IQ67 (CaM binding) domain containing family. | IQ-domain 1 | IQD1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G09710.1 | 2325 | Chr3: 2976572-2979784 |
AT3G09720.1 | 2498 | Chr3: 2979772-2983618 |
AT3G09720.2 | 2078 | Chr3: 2980221-2983618 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09720:three_prime_UTR:2 | 711 | Chr3: 2979772-2980482 | Arabidopsis thaliana |
AT3G09720:three_prime_UTR:1 | 262 | Chr3: 2980221-2980482 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RH57_ARATH | similarity | Belongs to the DEAD box helicase family. DDX52/ROK1 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
RNA helicase activity | ECO |
RNA binding | ECO |
ATP hydrolysis activity | ECO |
ATP binding | ECO |
biological process | |
maturation of SSU-rRNA | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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