External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 12, Exons: 10, Five Prime UTRs: 3, Genes: 2, mRNAs: 3, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09690:CDS:1 | 415 | Chr3: 2972356-2972770 | Arabidopsis thaliana |
AT3G09690:CDS:2 | 192 | Chr3: 2973029-2973220 | Arabidopsis thaliana |
AT3G09690:CDS:3 | 240 | Chr3: 2973318-2973557 | Arabidopsis thaliana |
AT3G09690:CDS:4 | 218 | Chr3: 2973672-2973889 | Arabidopsis thaliana |
AT3G09690:CDS:5 | 255 | Chr3: 2973988-2974242 | Arabidopsis thaliana |
AT3G09690:CDS:6 | 264 | Chr3: 2974329-2974592 | Arabidopsis thaliana |
AT3G09690:CDS:1.1 | 415 | Chr3: 2972356-2972770 | Arabidopsis thaliana |
AT3G09690:CDS:2.1 | 192 | Chr3: 2973029-2973220 | Arabidopsis thaliana |
AT3G09690:CDS:3.1 | 240 | Chr3: 2973318-2973557 | Arabidopsis thaliana |
AT3G09690:CDS:4.1 | 218 | Chr3: 2973672-2973889 | Arabidopsis thaliana |
AT3G09690:CDS:5.1 | 255 | Chr3: 2973988-2974242 | Arabidopsis thaliana |
AT3G09690:CDS:6.1 | 264 | Chr3: 2974329-2974592 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09690:exon:1 | 204 | Chr3: 2971813-2972016 | Arabidopsis thaliana |
AT3G09690:exon:3 | 487 | Chr3: 2972284-2972770 | Arabidopsis thaliana |
AT3G09690:exon:2 | 597 | Chr3: 2972174-2972770 | Arabidopsis thaliana |
AT3G09690:exon:4 | 192 | Chr3: 2973029-2973220 | Arabidopsis thaliana |
AT3G09690:exon:5 | 240 | Chr3: 2973318-2973557 | Arabidopsis thaliana |
AT3G09690:exon:6 | 218 | Chr3: 2973672-2973889 | Arabidopsis thaliana |
AT3G09690:exon:7 | 255 | Chr3: 2973988-2974242 | Arabidopsis thaliana |
AT3G09690:exon:8 | 515 | Chr3: 2974329-2974843 | Arabidopsis thaliana |
AT3G02215:exon:1 | 577 | Chr3: 2972175-2972751 | Arabidopsis thaliana |
AT3G09700:exon:3 | 449 | Chr3: 2974802-2975250 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09690:five_prime_UTR:1 | 204 | Chr3: 2971813-2972016 | Arabidopsis thaliana |
AT3G09690:five_prime_UTR:3 | 72 | Chr3: 2972284-2972355 | Arabidopsis thaliana |
AT3G09690:five_prime_UTR:2 | 182 | Chr3: 2972174-2972355 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G02215 | AT3G02215 | 577 | Chr3: 2972175-2972751 | A. thaliana | Natural antisense transcript overlaps with AT3G09690;(source:Araport11) | NULL | ||||
AT3G09700 | locus:2075004 | AT3G09700 | 1517 | Chr3: 2974802-2976318 | A. thaliana | Chaperone DnaJ-domain superfamily protein;(source:Araport11) | PAM18 homolog; part of Presequence Translocase-Associated Motor (PAM) complex which powers the translocation of proteins across the inner membrane and consists of Hsp70, the J-domain containing co-chaperones, Pam16 and Pam18, and their associated proteins Tim15 and Mge1. | Chaperone DnaJ-domain superfamily protein | PAM18-2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G09690.1 | 2111 | Chr3: 2971813-2974843 |
AT3G09690.2 | 2017 | Chr3: 2972174-2974843 |
AT3G09700.1 | 810 | Chr3: 2974802-2976318 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09690:three_prime_UTR:1 | 251 | Chr3: 2974593-2974843 | Arabidopsis thaliana |
AT3G09700:three_prime_UTR:1 | 292 | Chr3: 2974802-2975093 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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