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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09540:CDS:1 | 268 | Chr3: 2930870-2931137 | Arabidopsis thaliana |
AT3G09540:CDS:1.1 | 268 | Chr3: 2930870-2931137 | Arabidopsis thaliana |
AT3G09540:CDS:1.2 | 268 | Chr3: 2930870-2931137 | Arabidopsis thaliana |
AT3G09550:CDS:2 | 22 | Chr3: 2932007-2932028 | Arabidopsis thaliana |
AT3G09550:CDS:4 | 552 | Chr3: 2932236-2932787 | Arabidopsis thaliana |
AT3G09550:CDS:5 | 410 | Chr3: 2932882-2933291 | Arabidopsis thaliana |
AT3G09550:CDS:6 | 840 | Chr3: 2933360-2934199 | Arabidopsis thaliana |
AT3G09550:CDS:1 | 32 | Chr3: 2931809-2931840 | Arabidopsis thaliana |
AT3G09550:CDS:3 | 11 | Chr3: 2932018-2932028 | Arabidopsis thaliana |
AT3G09550:CDS:4.1 | 552 | Chr3: 2932236-2932787 | Arabidopsis thaliana |
AT3G09550:CDS:5.1 | 410 | Chr3: 2932882-2933291 | Arabidopsis thaliana |
AT3G09550:CDS:6.1 | 840 | Chr3: 2933360-2934199 | Arabidopsis thaliana |
AT3G09550:CDS:2.1 | 22 | Chr3: 2932007-2932028 | Arabidopsis thaliana |
AT3G09550:CDS:4.2 | 552 | Chr3: 2932236-2932787 | Arabidopsis thaliana |
AT3G09550:CDS:5.2 | 410 | Chr3: 2932882-2933291 | Arabidopsis thaliana |
AT3G09550:CDS:6.2 | 840 | Chr3: 2933360-2934199 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09540:exon:1 | 493 | Chr3: 2930870-2931362 | Arabidopsis thaliana |
AT3G09540:exon:3 | 420 | Chr3: 2930870-2931289 | Arabidopsis thaliana |
AT3G09540:exon:2 | 478 | Chr3: 2930870-2931347 | Arabidopsis thaliana |
AT3G09550:exon:1 | 24 | Chr3: 2931101-2931124 | Arabidopsis thaliana |
AT3G09550:exon:5 | 293 | Chr3: 2931736-2932028 | Arabidopsis thaliana |
AT3G09550:exon:2 | 23 | Chr3: 2931102-2931124 | Arabidopsis thaliana |
AT3G09550:exon:4 | 105 | Chr3: 2931736-2931840 | Arabidopsis thaliana |
AT3G09550:exon:6 | 11 | Chr3: 2932018-2932028 | Arabidopsis thaliana |
AT3G09550:exon:9 | 995 | Chr3: 2933360-2934354 | Arabidopsis thaliana |
AT3G09550:exon:3 | 567 | Chr3: 2931462-2932028 | Arabidopsis thaliana |
AT3G09550:exon:7 | 552 | Chr3: 2932236-2932787 | Arabidopsis thaliana |
AT3G09550:exon:8 | 410 | Chr3: 2932882-2933291 | Arabidopsis thaliana |
AT3G09550:exon:10 | 1006 | Chr3: 2933360-2934365 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09540:five_prime_UTR:1 | 225 | Chr3: 2931138-2931362 | Arabidopsis thaliana |
AT3G09540:five_prime_UTR:3 | 152 | Chr3: 2931138-2931289 | Arabidopsis thaliana |
AT3G09540:five_prime_UTR:2 | 210 | Chr3: 2931138-2931347 | Arabidopsis thaliana |
AT3G09550:five_prime_UTR:1 | 24 | Chr3: 2931101-2931124 | Arabidopsis thaliana |
AT3G09550:five_prime_UTR:5 | 271 | Chr3: 2931736-2932006 | Arabidopsis thaliana |
AT3G09550:five_prime_UTR:2 | 23 | Chr3: 2931102-2931124 | Arabidopsis thaliana |
AT3G09550:five_prime_UTR:4 | 73 | Chr3: 2931736-2931808 | Arabidopsis thaliana |
AT3G09550:five_prime_UTR:3 | 545 | Chr3: 2931462-2932006 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G09540 | locus:2074999 | AT3G09540 | 2611 | Chr3: 2928752-2931362 | A. thaliana | Pectin lyase-like superfamily protein;(source:Araport11) | Pectate lyase | Pectin lyase-like superfamily protein | AtPLL1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G09540.1 | 1689 | Chr3: 2928752-2931362 |
AT3G09540.2 | 1679 | Chr3: 2928783-2931289 |
AT3G09540.3 | 1619 | Chr3: 2928795-2931347 |
AT3G09550.1 | 2285 | Chr3: 2931101-2934365 |
AT3G09550.2 | 2096 | Chr3: 2931102-2934354 |
AT3G09550.3 | 2535 | Chr3: 2931462-2934365 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G09550:three_prime_UTR:1 | 155 | Chr3: 2934200-2934354 | Arabidopsis thaliana |
AT3G09550:three_prime_UTR:2 | 166 | Chr3: 2934200-2934365 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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