External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07180:CDS:15 | 117 | Chr3: 2282455-2282571 | Arabidopsis thaliana |
AT3G07180:CDS:14 | 104 | Chr3: 2282656-2282759 | Arabidopsis thaliana |
AT3G07180:CDS:13 | 73 | Chr3: 2282852-2282924 | Arabidopsis thaliana |
AT3G07180:CDS:12 | 48 | Chr3: 2283002-2283049 | Arabidopsis thaliana |
AT3G07180:CDS:11 | 82 | Chr3: 2283132-2283213 | Arabidopsis thaliana |
AT3G07180:CDS:10 | 131 | Chr3: 2283341-2283471 | Arabidopsis thaliana |
AT3G07180:CDS:9 | 84 | Chr3: 2283643-2283726 | Arabidopsis thaliana |
AT3G07180:CDS:8 | 85 | Chr3: 2283805-2283889 | Arabidopsis thaliana |
AT3G07180:CDS:7 | 74 | Chr3: 2284026-2284099 | Arabidopsis thaliana |
AT3G07180:CDS:5 | 90 | Chr3: 2284183-2284272 | Arabidopsis thaliana |
AT3G07180:CDS:4 | 85 | Chr3: 2284354-2284438 | Arabidopsis thaliana |
AT3G07180:CDS:2 | 697 | Chr3: 2284558-2285254 | Arabidopsis thaliana |
AT3G07180:CDS:1 | 130 | Chr3: 2285346-2285475 | Arabidopsis thaliana |
AT3G07180:CDS:15.1 | 117 | Chr3: 2282455-2282571 | Arabidopsis thaliana |
AT3G07180:CDS:14.1 | 104 | Chr3: 2282656-2282759 | Arabidopsis thaliana |
AT3G07180:CDS:13.1 | 73 | Chr3: 2282852-2282924 | Arabidopsis thaliana |
AT3G07180:CDS:6 | 69 | Chr3: 2284031-2284099 | Arabidopsis thaliana |
AT3G07180:CDS:5.1 | 90 | Chr3: 2284183-2284272 | Arabidopsis thaliana |
AT3G07180:CDS:4.1 | 85 | Chr3: 2284354-2284438 | Arabidopsis thaliana |
AT3G07180:CDS:2.1 | 697 | Chr3: 2284558-2285254 | Arabidopsis thaliana |
AT3G07180:CDS:1.1 | 130 | Chr3: 2285346-2285475 | Arabidopsis thaliana |
AT3G07180:CDS:15.2 | 117 | Chr3: 2282455-2282571 | Arabidopsis thaliana |
AT3G07180:CDS:14.2 | 104 | Chr3: 2282656-2282759 | Arabidopsis thaliana |
AT3G07180:CDS:13.2 | 73 | Chr3: 2282852-2282924 | Arabidopsis thaliana |
AT3G07180:CDS:12.1 | 48 | Chr3: 2283002-2283049 | Arabidopsis thaliana |
AT3G07180:CDS:11.1 | 82 | Chr3: 2283132-2283213 | Arabidopsis thaliana |
AT3G07180:CDS:10.1 | 131 | Chr3: 2283341-2283471 | Arabidopsis thaliana |
AT3G07180:CDS:9.1 | 84 | Chr3: 2283643-2283726 | Arabidopsis thaliana |
AT3G07180:CDS:8.1 | 85 | Chr3: 2283805-2283889 | Arabidopsis thaliana |
AT3G07180:CDS:7.1 | 74 | Chr3: 2284026-2284099 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:exon:8 | 287 | Chr3: 2282053-2282339 | Arabidopsis thaliana |
AT3G07180:exon:19 | 339 | Chr3: 2282233-2282571 | Arabidopsis thaliana |
AT3G07180:exon:2 | 190 | Chr3: 2285346-2285535 | Arabidopsis thaliana |
AT3G07180:exon:18 | 335 | Chr3: 2282237-2282571 | Arabidopsis thaliana |
AT3G07180:exon:8 | 69 | Chr3: 2284031-2284099 | Arabidopsis thaliana |
AT3G07180:exon:4 | 697 | Chr3: 2284558-2285254 | Arabidopsis thaliana |
AT3G07180:exon:3 | 168 | Chr3: 2285346-2285513 | Arabidopsis thaliana |
AT3G07180:exon:17 | 237 | Chr3: 2282335-2282571 | Arabidopsis thaliana |
AT3G07180:exon:16 | 104 | Chr3: 2282656-2282759 | Arabidopsis thaliana |
AT3G07180:exon:15 | 73 | Chr3: 2282852-2282924 | Arabidopsis thaliana |
AT3G07180:exon:14 | 48 | Chr3: 2283002-2283049 | Arabidopsis thaliana |
AT3G07180:exon:13 | 82 | Chr3: 2283132-2283213 | Arabidopsis thaliana |
AT3G07180:exon:12 | 131 | Chr3: 2283341-2283471 | Arabidopsis thaliana |
AT3G07180:exon:11 | 84 | Chr3: 2283643-2283726 | Arabidopsis thaliana |
AT3G07180:exon:10 | 85 | Chr3: 2283805-2283889 | Arabidopsis thaliana |
AT3G07180:exon:9 | 74 | Chr3: 2284026-2284099 | Arabidopsis thaliana |
AT3G07180:exon:7 | 90 | Chr3: 2284183-2284272 | Arabidopsis thaliana |
AT3G07180:exon:6 | 85 | Chr3: 2284354-2284438 | Arabidopsis thaliana |
AT3G07180:exon:5 | 673 | Chr3: 2284558-2285230 | Arabidopsis thaliana |
AT3G07180:exon:1 | 204 | Chr3: 2285346-2285549 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07180:five_prime_UTR:2 | 60 | Chr3: 2285476-2285535 | Arabidopsis thaliana |
AT3G07180:five_prime_UTR:3 | 38 | Chr3: 2285476-2285513 | Arabidopsis thaliana |
AT3G07180:five_prime_UTR:1 | 74 | Chr3: 2285476-2285549 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G07170 | locus:2098550 | AT3G07170 | 2146 | Chr3: 2280194-2282339 | A. thaliana | Sterile alpha motif (SAM) domain-containing protein;(source:Araport11) | NULL | Sterile alpha motif (SAM) domain-containing protein | IRP1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G07170.1 | 1088 | Chr3: 2280194-2282339 |
AT3G07180.1 | 2082 | Chr3: 2282233-2285535 |
AT3G07180.2 | 1621 | Chr3: 2282237-2285513 |
AT3G07180.3 | 1970 | Chr3: 2282335-2285549 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:three_prime_UTR:1 | 242 | Chr3: 2282098-2282339 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:3 | 222 | Chr3: 2282233-2282454 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:2 | 218 | Chr3: 2282237-2282454 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:1 | 120 | Chr3: 2282335-2282454 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4JDA6_ARATH Q8W4D7_ARATH F4JDA5_ARATH | pathway | Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis. |
F4JDA6_ARATH Q8W4D7_ARATH F4JDA5_ARATH | similarity | Belongs to the PIGS family. |
Function
Gene Ontology
cellular component | |
---|---|
endoplasmic reticulum | ECO |
plant-type vacuole | ECO |
GPI-anchor transamidase complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
attachment of GPI anchor to protein | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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