External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 12, Exons: 12, Five Prime UTRs: 2, Genes: 2, mRNAs: 5, Three Prime UTRs: 4
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:CDS:1 | 113 | Chr3: 2280428-2280540 | Arabidopsis thaliana |
AT3G07170:CDS:3 | 62 | Chr3: 2281061-2281122 | Arabidopsis thaliana |
AT3G07170:CDS:4 | 254 | Chr3: 2281221-2281474 | Arabidopsis thaliana |
AT3G07170:CDS:5 | 75 | Chr3: 2281648-2281722 | Arabidopsis thaliana |
AT3G07170:CDS:6 | 63 | Chr3: 2281811-2281873 | Arabidopsis thaliana |
AT3G07170:CDS:7 | 45 | Chr3: 2282053-2282097 | Arabidopsis thaliana |
AT3G07170:CDS:2 | 59 | Chr3: 2280714-2280772 | Arabidopsis thaliana |
AT3G07170:CDS:3.1 | 62 | Chr3: 2281061-2281122 | Arabidopsis thaliana |
AT3G07170:CDS:4.1 | 254 | Chr3: 2281221-2281474 | Arabidopsis thaliana |
AT3G07170:CDS:5.1 | 75 | Chr3: 2281648-2281722 | Arabidopsis thaliana |
AT3G07170:CDS:6.1 | 63 | Chr3: 2281811-2281873 | Arabidopsis thaliana |
AT3G07170:CDS:7.1 | 45 | Chr3: 2282053-2282097 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:exon:1 | 347 | Chr3: 2280194-2280540 | Arabidopsis thaliana |
AT3G07170:exon:8 | 287 | Chr3: 2282053-2282339 | Arabidopsis thaliana |
AT3G07170:exon:2 | 225 | Chr3: 2280548-2280772 | Arabidopsis thaliana |
AT3G07170:exon:3 | 62 | Chr3: 2281061-2281122 | Arabidopsis thaliana |
AT3G07170:exon:4 | 254 | Chr3: 2281221-2281474 | Arabidopsis thaliana |
AT3G07170:exon:5 | 75 | Chr3: 2281648-2281722 | Arabidopsis thaliana |
AT3G07170:exon:6 | 63 | Chr3: 2281811-2281873 | Arabidopsis thaliana |
AT3G07170:exon:7 | 45 | Chr3: 2282053-2282097 | Arabidopsis thaliana |
AT3G01945:exon:1 | 224 | Chr3: 2281851-2282074 | Arabidopsis thaliana |
AT3G07180:exon:19 | 339 | Chr3: 2282233-2282571 | Arabidopsis thaliana |
AT3G07180:exon:18 | 335 | Chr3: 2282237-2282571 | Arabidopsis thaliana |
AT3G07180:exon:17 | 237 | Chr3: 2282335-2282571 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:five_prime_UTR:1 | 234 | Chr3: 2280194-2280427 | Arabidopsis thaliana |
AT3G07170:five_prime_UTR:2 | 166 | Chr3: 2280548-2280713 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G01945 | AT3G01945 | 224 | Chr3: 2281851-2282074 | A. thaliana | Natural antisense transcript overlaps with AT3G07170;(source:Araport11) | NULL | ||||
AT3G07180 | locus:2098535 | AT3G07180 | 3317 | Chr3: 2282233-2285549 | A. thaliana | GPI transamidase component PIG-S-like protein;(source:Araport11) | NULL | GPI transamidase component PIG-S-related |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G07170.1 | 1088 | Chr3: 2280194-2282339 |
AT3G07170.2 | 724 | Chr3: 2280548-2282097 |
AT3G07180.1 | 2082 | Chr3: 2282233-2285535 |
AT3G07180.2 | 1621 | Chr3: 2282237-2285513 |
AT3G07180.3 | 1970 | Chr3: 2282335-2285549 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G07170:three_prime_UTR:1 | 242 | Chr3: 2282098-2282339 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:3 | 222 | Chr3: 2282233-2282454 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:2 | 218 | Chr3: 2282237-2282454 | Arabidopsis thaliana |
AT3G07180:three_prime_UTR:1 | 120 | Chr3: 2282335-2282454 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
rRNA processing | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...