External Links
Genomics
Genome feature
| Region: |
gene
|
Length: |
5251
 |
| Location: | Chr3:2150823-2156073 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G06820:CDS:11 |
123
|
Chr3: 2151027-2151149 | Arabidopsis thaliana |
| AT3G06820:CDS:10 |
55
|
Chr3: 2151233-2151287 | Arabidopsis thaliana |
| AT3G06820:CDS:9 |
81
|
Chr3: 2151359-2151439 | Arabidopsis thaliana |
| AT3G06820:CDS:8 |
159
|
Chr3: 2151513-2151671 | Arabidopsis thaliana |
| AT3G06820:CDS:7 |
179
|
Chr3: 2151756-2151934 | Arabidopsis thaliana |
| AT3G06820:CDS:6 |
207
|
Chr3: 2152117-2152323 | Arabidopsis thaliana |
| AT3G06820:CDS:5 |
86
|
Chr3: 2152417-2152502 | Arabidopsis thaliana |
| AT3G06820:CDS:4 |
85
|
Chr3: 2152575-2152659 | Arabidopsis thaliana |
| AT3G06820:CDS:11.1 |
123
|
Chr3: 2151027-2151149 | Arabidopsis thaliana |
| AT3G06820:CDS:10.1 |
55
|
Chr3: 2151233-2151287 | Arabidopsis thaliana |
| AT3G06820:CDS:9.1 |
81
|
Chr3: 2151359-2151439 | Arabidopsis thaliana |
| AT3G06820:CDS:8.1 |
159
|
Chr3: 2151513-2151671 | Arabidopsis thaliana |
| AT3G06820:CDS:7.1 |
179
|
Chr3: 2151756-2151934 | Arabidopsis thaliana |
| AT3G06820:CDS:6.1 |
207
|
Chr3: 2152117-2152323 | Arabidopsis thaliana |
| AT3G06820:CDS:5.1 |
86
|
Chr3: 2152417-2152502 | Arabidopsis thaliana |
| AT3G06820:CDS:3 |
88
|
Chr3: 2152575-2152662 | Arabidopsis thaliana |
| AT3G06820:CDS:2 |
129
|
Chr3: 2152795-2152923 | Arabidopsis thaliana |
| AT3G06820:CDS:1 |
111
|
Chr3: 2153154-2153264 | Arabidopsis thaliana |
| AT3G06820:CDS:11.2 |
123
|
Chr3: 2151027-2151149 | Arabidopsis thaliana |
| AT3G06820:CDS:10.2 |
55
|
Chr3: 2151233-2151287 | Arabidopsis thaliana |
| AT3G06820:CDS:9.2 |
81
|
Chr3: 2151359-2151439 | Arabidopsis thaliana |
| AT3G06820:CDS:8.2 |
159
|
Chr3: 2151513-2151671 | Arabidopsis thaliana |
| AT3G06820:CDS:7.2 |
179
|
Chr3: 2151756-2151934 | Arabidopsis thaliana |
| AT3G06820:CDS:6.2 |
207
|
Chr3: 2152117-2152323 | Arabidopsis thaliana |
| AT3G06820:CDS:5.2 |
86
|
Chr3: 2152417-2152502 | Arabidopsis thaliana |
| AT3G06820:CDS:3.1 |
88
|
Chr3: 2152575-2152662 | Arabidopsis thaliana |
| AT3G06820:CDS:2.1 |
129
|
Chr3: 2152795-2152923 | Arabidopsis thaliana |
| AT3G06820:CDS:1.1 |
111
|
Chr3: 2153154-2153264 | Arabidopsis thaliana |
| AT3G06830:CDS:1 |
637
|
Chr3: 2154193-2154829 | Arabidopsis thaliana |
| AT3G06830:CDS:2 |
381
|
Chr3: 2154920-2155300 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G06810:exon:17 |
392
|
Chr3: 2150460-2150851 | Arabidopsis thaliana |
| AT3G06820:exon:15 |
327
|
Chr3: 2150823-2151149 | Arabidopsis thaliana |
| AT3G06820:exon:6 |
349
|
Chr3: 2152575-2152923 | Arabidopsis thaliana |
| AT3G06820:exon:3 |
390
|
Chr3: 2153154-2153543 | Arabidopsis thaliana |
| AT3G06820:exon:2 |
518
|
Chr3: 2153154-2153671 | Arabidopsis thaliana |
| AT3G06820:exon:14 |
303
|
Chr3: 2150847-2151149 | Arabidopsis thaliana |
| AT3G06820:exon:13 |
55
|
Chr3: 2151233-2151287 | Arabidopsis thaliana |
| AT3G06820:exon:12 |
81
|
Chr3: 2151359-2151439 | Arabidopsis thaliana |
| AT3G06820:exon:11 |
159
|
Chr3: 2151513-2151671 | Arabidopsis thaliana |
| AT3G06820:exon:10 |
179
|
Chr3: 2151756-2151934 | Arabidopsis thaliana |
| AT3G06820:exon:9 |
207
|
Chr3: 2152117-2152323 | Arabidopsis thaliana |
| AT3G06820:exon:8 |
86
|
Chr3: 2152417-2152502 | Arabidopsis thaliana |
| AT3G06820:exon:7 |
88
|
Chr3: 2152575-2152662 | Arabidopsis thaliana |
| AT3G06820:exon:5 |
129
|
Chr3: 2152795-2152923 | Arabidopsis thaliana |
| AT3G06820:exon:4 |
199
|
Chr3: 2153154-2153352 | Arabidopsis thaliana |
| AT3G06820:exon:1 |
1928
|
Chr3: 2154146-2156073 | Arabidopsis thaliana |
| AT3G06830:exon:1 |
966
|
Chr3: 2153864-2154829 | Arabidopsis thaliana |
| AT3G06830:exon:2 |
381
|
Chr3: 2154920-2155300 | Arabidopsis thaliana |
| AT3G06830:exon:3 |
926
|
Chr3: 2155374-2156299 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G06820:five_prime_UTR:5 |
264
|
Chr3: 2152660-2152923 | Arabidopsis thaliana |
| AT3G06820:five_prime_UTR:4 |
390
|
Chr3: 2153154-2153543 | Arabidopsis thaliana |
| AT3G06820:five_prime_UTR:2 |
407
|
Chr3: 2153265-2153671 | Arabidopsis thaliana |
| AT3G06820:five_prime_UTR:3 |
88
|
Chr3: 2153265-2153352 | Arabidopsis thaliana |
| AT3G06820:five_prime_UTR:1 |
1928
|
Chr3: 2154146-2156073 | Arabidopsis thaliana |
| AT3G06830:five_prime_UTR:1 |
329
|
Chr3: 2153864-2154192 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G06810 | locus:2083328 | IBR3 | IBA-RESPONSE 3 |
4609
|
Chr3: 2146243-2150851 | A. thaliana | acyl-CoA dehydrogenase-like protein;(source:Araport11) | Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a β-oxidation-like process of IBA metabolism in Arabidopsis. Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting sequence and two other putative IBA metabolic enzymes (IBR1 and IBR10) can be found in this organelle. No specific enzymatic activity has been documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty acid β-oxidation. The mRNA is cell-to-cell mobile. | acyl-CoA dehydrogenase-related | IBR3 |
| AT3G06830 | locus:2083308 | AT3G06830 |
2436
|
Chr3: 2153864-2156299 | A. thaliana | Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11) | NULL | Plant invertase/pectin methylesterase inhibitor superfamily |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT3G06810.1 |
2963
|
Chr3: 2146243-2150851 |
| AT3G06820.1 |
1833
|
Chr3: 2150823-2153543 |
| AT3G06820.3 |
1805
|
Chr3: 2150847-2153671 |
| AT3G06820.2 |
3414
|
Chr3: 2150847-2156073 |
| AT3G06830.1 |
2273
|
Chr3: 2153864-2156299 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G06810:three_prime_UTR:1 |
197
|
Chr3: 2150655-2150851 | Arabidopsis thaliana |
| AT3G06820:three_prime_UTR:2 |
204
|
Chr3: 2150823-2151026 | Arabidopsis thaliana |
| AT3G06820:three_prime_UTR:1 |
180
|
Chr3: 2150847-2151026 | Arabidopsis thaliana |
| AT3G06830:three_prime_UTR:1 |
237
|
Chr3: 2156063-2156299 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
| Type | Comment | Proteins |
|---|---|---|
| F4JC55_ARATH | similarity | Belongs to the peptidase M67A family. BRCC36 subfamily. |
Function
Gene Ontology
| cellular component | |
|---|---|
|
BRISC complex
|
ECO |
|
BRCA1-A complex
|
ECO |
|
spindle pole
|
ECO |
| molecular function | |
|
cysteine-type deubiquitinase activity
|
ECO |
|
metallopeptidase activity
|
ECO |
|
metal ion binding
|
ECO |
| biological process | |
|
proteolysis
|
ECO |
|
DNA repair
|
ECO |
|
protein K63-linked deubiquitination
|
ECO |
|
cell division
|
ECO |
Expression
BAR Webservices
Co-expression
|
Querying ATTED Service...
Data Source: ATTED-II |
|---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...
