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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G06290:CDS:22 | 1800 | Chr3: 1899123-1900922 | Arabidopsis thaliana |
AT3G06290:CDS:21 | 118 | Chr3: 1901042-1901159 | Arabidopsis thaliana |
AT3G06290:CDS:20 | 881 | Chr3: 1901232-1902112 | Arabidopsis thaliana |
AT3G06290:CDS:19 | 93 | Chr3: 1902216-1902308 | Arabidopsis thaliana |
AT3G06290:CDS:18 | 94 | Chr3: 1902409-1902502 | Arabidopsis thaliana |
AT3G06290:CDS:17 | 92 | Chr3: 1902579-1902670 | Arabidopsis thaliana |
AT3G06290:CDS:16 | 228 | Chr3: 1902747-1902974 | Arabidopsis thaliana |
AT3G06290:CDS:15 | 216 | Chr3: 1903075-1903290 | Arabidopsis thaliana |
AT3G06290:CDS:14 | 101 | Chr3: 1903399-1903499 | Arabidopsis thaliana |
AT3G06290:CDS:12 | 248 | Chr3: 1903691-1903938 | Arabidopsis thaliana |
AT3G06290:CDS:11 | 219 | Chr3: 1904028-1904246 | Arabidopsis thaliana |
AT3G06290:CDS:10 | 213 | Chr3: 1904610-1904822 | Arabidopsis thaliana |
AT3G06290:CDS:9 | 123 | Chr3: 1905068-1905190 | Arabidopsis thaliana |
AT3G06290:CDS:7 | 165 | Chr3: 1905491-1905655 | Arabidopsis thaliana |
AT3G06290:CDS:6 | 93 | Chr3: 1905958-1906050 | Arabidopsis thaliana |
AT3G06290:CDS:5 | 93 | Chr3: 1906270-1906362 | Arabidopsis thaliana |
AT3G06290:CDS:4 | 93 | Chr3: 1906534-1906626 | Arabidopsis thaliana |
AT3G06290:CDS:3 | 81 | Chr3: 1906779-1906859 | Arabidopsis thaliana |
AT3G06290:CDS:1 | 89 | Chr3: 1907209-1907297 | Arabidopsis thaliana |
AT3G06290:CDS:22.1 | 1800 | Chr3: 1899123-1900922 | Arabidopsis thaliana |
AT3G06290:CDS:21.1 | 118 | Chr3: 1901042-1901159 | Arabidopsis thaliana |
AT3G06290:CDS:20.1 | 881 | Chr3: 1901232-1902112 | Arabidopsis thaliana |
AT3G06290:CDS:19.1 | 93 | Chr3: 1902216-1902308 | Arabidopsis thaliana |
AT3G06290:CDS:18.1 | 94 | Chr3: 1902409-1902502 | Arabidopsis thaliana |
AT3G06290:CDS:17.1 | 92 | Chr3: 1902579-1902670 | Arabidopsis thaliana |
AT3G06290:CDS:16.1 | 228 | Chr3: 1902747-1902974 | Arabidopsis thaliana |
AT3G06290:CDS:15.1 | 216 | Chr3: 1903075-1903290 | Arabidopsis thaliana |
AT3G06290:CDS:14.1 | 101 | Chr3: 1903399-1903499 | Arabidopsis thaliana |
AT3G06290:CDS:13 | 139 | Chr3: 1903691-1903829 | Arabidopsis thaliana |
AT3G06290:CDS:22.2 | 1800 | Chr3: 1899123-1900922 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G06290:exon:24 | 2046 | Chr3: 1898877-1900922 | Arabidopsis thaliana |
AT3G06290:exon:4 | 81 | Chr3: 1906779-1906859 | Arabidopsis thaliana |
AT3G06290:exon:1 | 240 | Chr3: 1907209-1907448 | Arabidopsis thaliana |
AT3G06290:exon:13 | 276 | Chr3: 1903691-1903966 | Arabidopsis thaliana |
AT3G06290:exon:8 | 207 | Chr3: 1905491-1905697 | Arabidopsis thaliana |
AT3G06290:exon:23 | 1881 | Chr3: 1899042-1900922 | Arabidopsis thaliana |
AT3G06290:exon:22 | 118 | Chr3: 1901042-1901159 | Arabidopsis thaliana |
AT3G06290:exon:21 | 881 | Chr3: 1901232-1902112 | Arabidopsis thaliana |
AT3G06290:exon:20 | 93 | Chr3: 1902216-1902308 | Arabidopsis thaliana |
AT3G06290:exon:19 | 94 | Chr3: 1902409-1902502 | Arabidopsis thaliana |
AT3G06290:exon:18 | 92 | Chr3: 1902579-1902670 | Arabidopsis thaliana |
AT3G06290:exon:17 | 228 | Chr3: 1902747-1902974 | Arabidopsis thaliana |
AT3G06290:exon:16 | 216 | Chr3: 1903075-1903290 | Arabidopsis thaliana |
AT3G06290:exon:15 | 101 | Chr3: 1903399-1903499 | Arabidopsis thaliana |
AT3G06290:exon:14 | 248 | Chr3: 1903691-1903938 | Arabidopsis thaliana |
AT3G06290:exon:12 | 219 | Chr3: 1904028-1904246 | Arabidopsis thaliana |
AT3G06290:exon:11 | 213 | Chr3: 1904610-1904822 | Arabidopsis thaliana |
AT3G06290:exon:10 | 123 | Chr3: 1905068-1905190 | Arabidopsis thaliana |
AT3G06290:exon:9 | 165 | Chr3: 1905491-1905655 | Arabidopsis thaliana |
AT3G06290:exon:7 | 93 | Chr3: 1905958-1906050 | Arabidopsis thaliana |
AT3G06290:exon:6 | 93 | Chr3: 1906270-1906362 | Arabidopsis thaliana |
AT3G06290:exon:5 | 93 | Chr3: 1906534-1906626 | Arabidopsis thaliana |
AT3G06290:exon:3 | 135 | Chr3: 1906779-1906913 | Arabidopsis thaliana |
AT3G06290:exon:2 | 89 | Chr3: 1907209-1907297 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G06290:five_prime_UTR:1 | 151 | Chr3: 1907298-1907448 | Arabidopsis thaliana |
AT3G06290:five_prime_UTR:3 | 137 | Chr3: 1903830-1903966 | Arabidopsis thaliana |
AT3G06290:five_prime_UTR:2 | 154 | Chr3: 1905544-1905697 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G06290.2 | 5437 | Chr3: 1898877-1907448 |
AT3G06290.4 | 3980 | Chr3: 1899042-1903966 |
AT3G06290.3 | 4714 | Chr3: 1899042-1905697 |
AT3G06290.1 | 5175 | Chr3: 1899042-1907297 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G06290:three_prime_UTR:2 | 246 | Chr3: 1898877-1899122 | Arabidopsis thaliana |
AT3G06290:three_prime_UTR:1 | 81 | Chr3: 1899042-1899122 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SAC3B_ARATH | function | Component of the TREX-2 complex (transcription and export complex 2), a muliprotein complex that functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery (PubMed:19843313). |
SAC3B_ARATH | similarity | Belongs to the SAC3 family. |
SAC3B_ARATH | subcellular location | Apparent concentration to the nuclear periphery. |
Function
Gene Ontology
cellular component | |
---|---|
nuclear periphery | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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