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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05190:CDS:1 | 78 | Chr3: 1471457-1471534 | Arabidopsis thaliana |
AT3G05190:CDS:2 | 99 | Chr3: 1471823-1471921 | Arabidopsis thaliana |
AT3G05190:CDS:3 | 72 | Chr3: 1472002-1472073 | Arabidopsis thaliana |
AT3G05190:CDS:4 | 93 | Chr3: 1472168-1472260 | Arabidopsis thaliana |
AT3G05190:CDS:5 | 138 | Chr3: 1472347-1472484 | Arabidopsis thaliana |
AT3G05190:CDS:6 | 59 | Chr3: 1472571-1472629 | Arabidopsis thaliana |
AT3G05190:CDS:7 | 103 | Chr3: 1472715-1472817 | Arabidopsis thaliana |
AT3G05190:CDS:8 | 189 | Chr3: 1472896-1473084 | Arabidopsis thaliana |
AT3G05190:CDS:9 | 101 | Chr3: 1473181-1473281 | Arabidopsis thaliana |
AT3G05190:CDS:10 | 55 | Chr3: 1473368-1473422 | Arabidopsis thaliana |
AT3G05190:CDS:11 | 87 | Chr3: 1473509-1473595 | Arabidopsis thaliana |
AT3G05190:CDS:12 | 52 | Chr3: 1473692-1473743 | Arabidopsis thaliana |
AT3G05190:CDS:13 | 86 | Chr3: 1473846-1473931 | Arabidopsis thaliana |
AT3G05190:CDS:14 | 54 | Chr3: 1474026-1474079 | Arabidopsis thaliana |
AT3G05190:CDS:15 | 84 | Chr3: 1474166-1474249 | Arabidopsis thaliana |
AT3G05190:CDS:16 | 72 | Chr3: 1474357-1474428 | Arabidopsis thaliana |
AT3G05190:CDS:17 | 81 | Chr3: 1474511-1474591 | Arabidopsis thaliana |
AT3G05190:CDS:18 | 36 | Chr3: 1474699-1474734 | Arabidopsis thaliana |
AT3G05190:CDS:19 | 129 | Chr3: 1474939-1475067 | Arabidopsis thaliana |
AT3G05190:CDS:1.1 | 78 | Chr3: 1471457-1471534 | Arabidopsis thaliana |
AT3G05190:CDS:2.1 | 99 | Chr3: 1471823-1471921 | Arabidopsis thaliana |
AT3G05190:CDS:3.1 | 72 | Chr3: 1472002-1472073 | Arabidopsis thaliana |
AT3G05190:CDS:4.1 | 93 | Chr3: 1472168-1472260 | Arabidopsis thaliana |
AT3G05190:CDS:5.1 | 138 | Chr3: 1472347-1472484 | Arabidopsis thaliana |
AT3G05190:CDS:6.1 | 59 | Chr3: 1472571-1472629 | Arabidopsis thaliana |
AT3G05190:CDS:7.1 | 103 | Chr3: 1472715-1472817 | Arabidopsis thaliana |
AT3G05190:CDS:8.1 | 189 | Chr3: 1472896-1473084 | Arabidopsis thaliana |
AT3G05190:CDS:9.1 | 101 | Chr3: 1473181-1473281 | Arabidopsis thaliana |
AT3G05190:CDS:10.1 | 55 | Chr3: 1473368-1473422 | Arabidopsis thaliana |
AT3G05190:CDS:11.1 | 87 | Chr3: 1473509-1473595 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05190:exon:1 | 56 | Chr3: 1471083-1471138 | Arabidopsis thaliana |
AT3G05190:exon:2 | 289 | Chr3: 1471246-1471534 | Arabidopsis thaliana |
AT3G05190:exon:23 | 404 | Chr3: 1475381-1475784 | Arabidopsis thaliana |
AT3G05190:exon:21 | 144 | Chr3: 1474939-1475082 | Arabidopsis thaliana |
AT3G05190:exon:24 | 452 | Chr3: 1475381-1475832 | Arabidopsis thaliana |
AT3G05190:exon:3 | 279 | Chr3: 1471256-1471534 | Arabidopsis thaliana |
AT3G05190:exon:4 | 99 | Chr3: 1471823-1471921 | Arabidopsis thaliana |
AT3G05190:exon:5 | 72 | Chr3: 1472002-1472073 | Arabidopsis thaliana |
AT3G05190:exon:6 | 93 | Chr3: 1472168-1472260 | Arabidopsis thaliana |
AT3G05190:exon:7 | 138 | Chr3: 1472347-1472484 | Arabidopsis thaliana |
AT3G05190:exon:8 | 59 | Chr3: 1472571-1472629 | Arabidopsis thaliana |
AT3G05190:exon:9 | 103 | Chr3: 1472715-1472817 | Arabidopsis thaliana |
AT3G05190:exon:10 | 189 | Chr3: 1472896-1473084 | Arabidopsis thaliana |
AT3G05190:exon:11 | 101 | Chr3: 1473181-1473281 | Arabidopsis thaliana |
AT3G05190:exon:12 | 55 | Chr3: 1473368-1473422 | Arabidopsis thaliana |
AT3G05190:exon:13 | 87 | Chr3: 1473509-1473595 | Arabidopsis thaliana |
AT3G05190:exon:14 | 52 | Chr3: 1473692-1473743 | Arabidopsis thaliana |
AT3G05190:exon:15 | 86 | Chr3: 1473846-1473931 | Arabidopsis thaliana |
AT3G05190:exon:16 | 54 | Chr3: 1474026-1474079 | Arabidopsis thaliana |
AT3G05190:exon:17 | 84 | Chr3: 1474166-1474249 | Arabidopsis thaliana |
AT3G05190:exon:18 | 72 | Chr3: 1474357-1474428 | Arabidopsis thaliana |
AT3G05190:exon:19 | 81 | Chr3: 1474511-1474591 | Arabidopsis thaliana |
AT3G05190:exon:20 | 36 | Chr3: 1474699-1474734 | Arabidopsis thaliana |
AT3G05190:exon:22 | 894 | Chr3: 1474939-1475832 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05190:five_prime_UTR:1 | 56 | Chr3: 1471083-1471138 | Arabidopsis thaliana |
AT3G05190:five_prime_UTR:2 | 211 | Chr3: 1471246-1471456 | Arabidopsis thaliana |
AT3G05190:five_prime_UTR:3 | 201 | Chr3: 1471256-1471456 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G05190.1 | 2354 | Chr3: 1471083-1475784 |
AT3G05190.3 | 2336 | Chr3: 1471256-1475832 |
AT3G05190.2 | 2634 | Chr3: 1471256-1475832 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05190:three_prime_UTR:3 | 404 | Chr3: 1475381-1475784 | Arabidopsis thaliana |
AT3G05190:three_prime_UTR:1 | 15 | Chr3: 1475068-1475082 | Arabidopsis thaliana |
AT3G05190:three_prime_UTR:4 | 452 | Chr3: 1475381-1475832 | Arabidopsis thaliana |
AT3G05190:three_prime_UTR:2 | 765 | Chr3: 1475068-1475832 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
BCAL1_ARATH | similarity | Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
catalytic activity | ECO |
biological process | |
carboxylic acid biosynthetic process | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...