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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05090:CDS:17 | 99 | Chr3: 1418573-1418671 | Arabidopsis thaliana |
AT3G05090:CDS:16 | 183 | Chr3: 1418774-1418956 | Arabidopsis thaliana |
AT3G05090:CDS:15 | 94 | Chr3: 1419035-1419128 | Arabidopsis thaliana |
AT3G05090:CDS:14 | 353 | Chr3: 1419272-1419624 | Arabidopsis thaliana |
AT3G05090:CDS:13 | 135 | Chr3: 1419824-1419958 | Arabidopsis thaliana |
AT3G05090:CDS:12 | 39 | Chr3: 1420053-1420091 | Arabidopsis thaliana |
AT3G05090:CDS:11 | 66 | Chr3: 1420242-1420307 | Arabidopsis thaliana |
AT3G05090:CDS:10 | 96 | Chr3: 1420402-1420497 | Arabidopsis thaliana |
AT3G05090:CDS:9 | 237 | Chr3: 1420579-1420815 | Arabidopsis thaliana |
AT3G05090:CDS:8 | 121 | Chr3: 1420908-1421028 | Arabidopsis thaliana |
AT3G05090:CDS:7 | 36 | Chr3: 1421108-1421143 | Arabidopsis thaliana |
AT3G05090:CDS:6 | 98 | Chr3: 1421265-1421362 | Arabidopsis thaliana |
AT3G05090:CDS:5 | 291 | Chr3: 1421468-1421758 | Arabidopsis thaliana |
AT3G05090:CDS:4 | 90 | Chr3: 1421896-1421985 | Arabidopsis thaliana |
AT3G05090:CDS:3 | 66 | Chr3: 1422087-1422152 | Arabidopsis thaliana |
AT3G05090:CDS:2 | 159 | Chr3: 1422282-1422440 | Arabidopsis thaliana |
AT3G05090:CDS:1 | 99 | Chr3: 1422625-1422723 | Arabidopsis thaliana |
AT3G05090:CDS:17.1 | 99 | Chr3: 1418573-1418671 | Arabidopsis thaliana |
AT3G05090:CDS:16.1 | 183 | Chr3: 1418774-1418956 | Arabidopsis thaliana |
AT3G05090:CDS:15.1 | 94 | Chr3: 1419035-1419128 | Arabidopsis thaliana |
AT3G05090:CDS:14.1 | 353 | Chr3: 1419272-1419624 | Arabidopsis thaliana |
AT3G05090:CDS:13.1 | 135 | Chr3: 1419824-1419958 | Arabidopsis thaliana |
AT3G05090:CDS:12.1 | 39 | Chr3: 1420053-1420091 | Arabidopsis thaliana |
AT3G05090:CDS:11.1 | 66 | Chr3: 1420242-1420307 | Arabidopsis thaliana |
AT3G05090:CDS:10.1 | 96 | Chr3: 1420402-1420497 | Arabidopsis thaliana |
AT3G05090:CDS:9.1 | 237 | Chr3: 1420579-1420815 | Arabidopsis thaliana |
AT3G05090:CDS:8.1 | 121 | Chr3: 1420908-1421028 | Arabidopsis thaliana |
AT3G05090:CDS:7.1 | 36 | Chr3: 1421108-1421143 | Arabidopsis thaliana |
AT3G05090:CDS:6.1 | 98 | Chr3: 1421265-1421362 | Arabidopsis thaliana |
AT3G05090:CDS:5.1 | 291 | Chr3: 1421468-1421758 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05090:exon:23 | 356 | Chr3: 1417893-1418248 | Arabidopsis thaliana |
AT3G05090:exon:21 | 107 | Chr3: 1418565-1418671 | Arabidopsis thaliana |
AT3G05090:exon:2 | 380 | Chr3: 1423292-1423671 | Arabidopsis thaliana |
AT3G05090:exon:22 | 411 | Chr3: 1418261-1418671 | Arabidopsis thaliana |
AT3G05090:exon:1 | 382 | Chr3: 1423292-1423673 | Arabidopsis thaliana |
AT3G05090:exon:20 | 99 | Chr3: 1418573-1418671 | Arabidopsis thaliana |
AT3G05090:exon:19 | 183 | Chr3: 1418774-1418956 | Arabidopsis thaliana |
AT3G05090:exon:18 | 94 | Chr3: 1419035-1419128 | Arabidopsis thaliana |
AT3G05090:exon:17 | 353 | Chr3: 1419272-1419624 | Arabidopsis thaliana |
AT3G05090:exon:16 | 135 | Chr3: 1419824-1419958 | Arabidopsis thaliana |
AT3G05090:exon:15 | 39 | Chr3: 1420053-1420091 | Arabidopsis thaliana |
AT3G05090:exon:14 | 66 | Chr3: 1420242-1420307 | Arabidopsis thaliana |
AT3G05090:exon:13 | 96 | Chr3: 1420402-1420497 | Arabidopsis thaliana |
AT3G05090:exon:12 | 237 | Chr3: 1420579-1420815 | Arabidopsis thaliana |
AT3G05090:exon:11 | 121 | Chr3: 1420908-1421028 | Arabidopsis thaliana |
AT3G05090:exon:10 | 36 | Chr3: 1421108-1421143 | Arabidopsis thaliana |
AT3G05090:exon:9 | 98 | Chr3: 1421265-1421362 | Arabidopsis thaliana |
AT3G05090:exon:8 | 291 | Chr3: 1421468-1421758 | Arabidopsis thaliana |
AT3G05090:exon:7 | 90 | Chr3: 1421896-1421985 | Arabidopsis thaliana |
AT3G05090:exon:6 | 66 | Chr3: 1422087-1422152 | Arabidopsis thaliana |
AT3G05090:exon:5 | 159 | Chr3: 1422282-1422440 | Arabidopsis thaliana |
AT3G05090:exon:4 | 118 | Chr3: 1422625-1422742 | Arabidopsis thaliana |
AT3G05090:exon:3 | 265 | Chr3: 1422898-1423162 | Arabidopsis thaliana |
AT3G05080:exon:1 | 374 | Chr3: 1417907-1418280 | Arabidopsis thaliana |
AT3G01605:exon:1 | 190 | Chr3: 1419106-1419295 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05090:five_prime_UTR:2 | 380 | Chr3: 1423292-1423671 | Arabidopsis thaliana |
AT3G05090:five_prime_UTR:1 | 382 | Chr3: 1423292-1423673 | Arabidopsis thaliana |
AT3G05090:five_prime_UTR:4 | 19 | Chr3: 1422724-1422742 | Arabidopsis thaliana |
AT3G05090:five_prime_UTR:3 | 265 | Chr3: 1422898-1423162 | Arabidopsis thaliana |
AT3G05080:five_prime_UTR:1 | 131 | Chr3: 1417907-1418037 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G05080 | locus:2096359 | AT3G05080 | 374 | Chr3: 1417907-1418280 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL | ||
AT3G01605 | AT3G01605 | 190 | Chr3: 1419106-1419295 | A. thaliana | Natural antisense transcript overlaps with AT3G05090;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G05090.2 | 3025 | Chr3: 1417893-1423671 |
AT3G05090.1 | 2975 | Chr3: 1418261-1423673 |
AT3G05090.3 | 2546 | Chr3: 1418573-1423162 |
AT3G05080.1 | 374 | Chr3: 1417907-1418280 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05090:three_prime_UTR:3 | 356 | Chr3: 1417893-1418248 | Arabidopsis thaliana |
AT3G05090:three_prime_UTR:1 | 8 | Chr3: 1418565-1418572 | Arabidopsis thaliana |
AT3G05090:three_prime_UTR:2 | 312 | Chr3: 1418261-1418572 | Arabidopsis thaliana |
AT3G05080:three_prime_UTR:1 | 135 | Chr3: 1418146-1418280 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q93ZS6_ARATH | similarity | Belongs to the WD repeat WDR48 family. |
Function
Gene Ontology
cellular component | |
---|---|
Cul4-RING E3 ubiquitin ligase complex | ECO |
cytosol | ECO |
molecular function | |
No terms in this category. | |
biological process | |
lateral root formation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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