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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 21, Exons: 14, Five Prime UTRs: 5, Gene: 1, Lnc RNA: 1, mRNAs: 3, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05050:CDS:7 | 294 | Chr3: 1408789-1409082 | Arabidopsis thaliana |
AT3G05050:CDS:6 | 118 | Chr3: 1409164-1409281 | Arabidopsis thaliana |
AT3G05050:CDS:5 | 101 | Chr3: 1409391-1409491 | Arabidopsis thaliana |
AT3G05050:CDS:4 | 237 | Chr3: 1409678-1409914 | Arabidopsis thaliana |
AT3G05050:CDS:3 | 318 | Chr3: 1409998-1410315 | Arabidopsis thaliana |
AT3G05050:CDS:2 | 285 | Chr3: 1410396-1410680 | Arabidopsis thaliana |
AT3G05050:CDS:1 | 429 | Chr3: 1410766-1411194 | Arabidopsis thaliana |
AT3G05050:CDS:7.1 | 294 | Chr3: 1408789-1409082 | Arabidopsis thaliana |
AT3G05050:CDS:6.1 | 118 | Chr3: 1409164-1409281 | Arabidopsis thaliana |
AT3G05050:CDS:5.1 | 101 | Chr3: 1409391-1409491 | Arabidopsis thaliana |
AT3G05050:CDS:4.1 | 237 | Chr3: 1409678-1409914 | Arabidopsis thaliana |
AT3G05050:CDS:3.1 | 318 | Chr3: 1409998-1410315 | Arabidopsis thaliana |
AT3G05050:CDS:2.1 | 285 | Chr3: 1410396-1410680 | Arabidopsis thaliana |
AT3G05050:CDS:1.1 | 429 | Chr3: 1410766-1411194 | Arabidopsis thaliana |
AT3G05050:CDS:7.2 | 294 | Chr3: 1408789-1409082 | Arabidopsis thaliana |
AT3G05050:CDS:6.2 | 118 | Chr3: 1409164-1409281 | Arabidopsis thaliana |
AT3G05050:CDS:5.2 | 101 | Chr3: 1409391-1409491 | Arabidopsis thaliana |
AT3G05050:CDS:4.2 | 237 | Chr3: 1409678-1409914 | Arabidopsis thaliana |
AT3G05050:CDS:3.2 | 318 | Chr3: 1409998-1410315 | Arabidopsis thaliana |
AT3G05050:CDS:2.2 | 285 | Chr3: 1410396-1410680 | Arabidopsis thaliana |
AT3G05050:CDS:1.2 | 429 | Chr3: 1410766-1411194 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05050:exon:13 | 526 | Chr3: 1408557-1409082 | Arabidopsis thaliana |
AT3G05050:exon:3 | 51 | Chr3: 1411424-1411474 | Arabidopsis thaliana |
AT3G05050:exon:1 | 310 | Chr3: 1411851-1412160 | Arabidopsis thaliana |
AT3G05050:exon:12 | 510 | Chr3: 1408573-1409082 | Arabidopsis thaliana |
AT3G05050:exon:4 | 614 | Chr3: 1410766-1411379 | Arabidopsis thaliana |
AT3G05050:exon:11 | 507 | Chr3: 1408576-1409082 | Arabidopsis thaliana |
AT3G05050:exon:10 | 118 | Chr3: 1409164-1409281 | Arabidopsis thaliana |
AT3G05050:exon:9 | 101 | Chr3: 1409391-1409491 | Arabidopsis thaliana |
AT3G05050:exon:8 | 237 | Chr3: 1409678-1409914 | Arabidopsis thaliana |
AT3G05050:exon:7 | 318 | Chr3: 1409998-1410315 | Arabidopsis thaliana |
AT3G05050:exon:6 | 285 | Chr3: 1410396-1410680 | Arabidopsis thaliana |
AT3G05050:exon:5 | 513 | Chr3: 1410766-1411278 | Arabidopsis thaliana |
AT3G05050:exon:2 | 771 | Chr3: 1411424-1412194 | Arabidopsis thaliana |
AT3G01595:exon:1 | 272 | Chr3: 1411889-1412160 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05050:five_prime_UTR:3 | 51 | Chr3: 1411424-1411474 | Arabidopsis thaliana |
AT3G05050:five_prime_UTR:1 | 310 | Chr3: 1411851-1412160 | Arabidopsis thaliana |
AT3G05050:five_prime_UTR:4 | 185 | Chr3: 1411195-1411379 | Arabidopsis thaliana |
AT3G05050:five_prime_UTR:5 | 84 | Chr3: 1411195-1411278 | Arabidopsis thaliana |
AT3G05050:five_prime_UTR:2 | 771 | Chr3: 1411424-1412194 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G01595 | AT3G01595 | 272 | Chr3: 1411889-1412160 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G05050.2 | 2459 | Chr3: 1408557-1412160 |
AT3G05050.3 | 2183 | Chr3: 1408573-1411379 |
AT3G05050.1 | 2850 | Chr3: 1408576-1412194 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G05050:three_prime_UTR:3 | 232 | Chr3: 1408557-1408788 | Arabidopsis thaliana |
AT3G05050:three_prime_UTR:2 | 216 | Chr3: 1408573-1408788 | Arabidopsis thaliana |
AT3G05050:three_prime_UTR:1 | 213 | Chr3: 1408576-1408788 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE05950 | 468 | Chr3: 1410121-1410588 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE05950:transposon_fragment:1 | 468 | Chr3: 1410121-1410588 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A654F4A3_ARATH | similarity | Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ATP binding | ECO |
protein serine/threonine kinase activity | ECO |
biological process | |
protein phosphorylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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