External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04820:CDS:20 | 27 | Chr3: 1321453-1321479 | Arabidopsis thaliana |
AT3G04820:CDS:19 | 313 | Chr3: 1321606-1321918 | Arabidopsis thaliana |
AT3G04820:CDS:18 | 69 | Chr3: 1322010-1322078 | Arabidopsis thaliana |
AT3G04820:CDS:17 | 38 | Chr3: 1322180-1322217 | Arabidopsis thaliana |
AT3G04820:CDS:16 | 61 | Chr3: 1322339-1322399 | Arabidopsis thaliana |
AT3G04820:CDS:15 | 68 | Chr3: 1322486-1322553 | Arabidopsis thaliana |
AT3G04820:CDS:14 | 176 | Chr3: 1322798-1322973 | Arabidopsis thaliana |
AT3G04820:CDS:13 | 65 | Chr3: 1323069-1323133 | Arabidopsis thaliana |
AT3G04820:CDS:12 | 74 | Chr3: 1323276-1323349 | Arabidopsis thaliana |
AT3G04820:CDS:11 | 104 | Chr3: 1323434-1323537 | Arabidopsis thaliana |
AT3G04820:CDS:10 | 103 | Chr3: 1323661-1323763 | Arabidopsis thaliana |
AT3G04820:CDS:9 | 88 | Chr3: 1323923-1324010 | Arabidopsis thaliana |
AT3G04820:CDS:8 | 63 | Chr3: 1324175-1324237 | Arabidopsis thaliana |
AT3G04820:CDS:7 | 80 | Chr3: 1324321-1324400 | Arabidopsis thaliana |
AT3G04820:CDS:6 | 57 | Chr3: 1324479-1324535 | Arabidopsis thaliana |
AT3G04820:CDS:5 | 73 | Chr3: 1324640-1324712 | Arabidopsis thaliana |
AT3G04820:CDS:4 | 215 | Chr3: 1324972-1325186 | Arabidopsis thaliana |
AT3G04820:CDS:3 | 201 | Chr3: 1325279-1325479 | Arabidopsis thaliana |
AT3G04820:CDS:2 | 82 | Chr3: 1325573-1325654 | Arabidopsis thaliana |
AT3G04820:CDS:1 | 191 | Chr3: 1325759-1325949 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04810:exon:20 | 868 | Chr3: 1320427-1321294 | Arabidopsis thaliana |
AT3G04810:exon:19 | 843 | Chr3: 1320427-1321269 | Arabidopsis thaliana |
AT3G04820:exon:20 | 252 | Chr3: 1321228-1321479 | Arabidopsis thaliana |
AT3G04820:exon:19 | 313 | Chr3: 1321606-1321918 | Arabidopsis thaliana |
AT3G04820:exon:18 | 69 | Chr3: 1322010-1322078 | Arabidopsis thaliana |
AT3G04820:exon:17 | 38 | Chr3: 1322180-1322217 | Arabidopsis thaliana |
AT3G04820:exon:16 | 61 | Chr3: 1322339-1322399 | Arabidopsis thaliana |
AT3G04820:exon:15 | 68 | Chr3: 1322486-1322553 | Arabidopsis thaliana |
AT3G04820:exon:14 | 176 | Chr3: 1322798-1322973 | Arabidopsis thaliana |
AT3G04820:exon:13 | 65 | Chr3: 1323069-1323133 | Arabidopsis thaliana |
AT3G04820:exon:12 | 74 | Chr3: 1323276-1323349 | Arabidopsis thaliana |
AT3G04820:exon:11 | 104 | Chr3: 1323434-1323537 | Arabidopsis thaliana |
AT3G04820:exon:10 | 103 | Chr3: 1323661-1323763 | Arabidopsis thaliana |
AT3G04820:exon:9 | 88 | Chr3: 1323923-1324010 | Arabidopsis thaliana |
AT3G04820:exon:8 | 63 | Chr3: 1324175-1324237 | Arabidopsis thaliana |
AT3G04820:exon:7 | 80 | Chr3: 1324321-1324400 | Arabidopsis thaliana |
AT3G04820:exon:6 | 57 | Chr3: 1324479-1324535 | Arabidopsis thaliana |
AT3G04820:exon:5 | 73 | Chr3: 1324640-1324712 | Arabidopsis thaliana |
AT3G04820:exon:4 | 215 | Chr3: 1324972-1325186 | Arabidopsis thaliana |
AT3G04820:exon:3 | 201 | Chr3: 1325279-1325479 | Arabidopsis thaliana |
AT3G04820:exon:2 | 82 | Chr3: 1325573-1325654 | Arabidopsis thaliana |
AT3G04820:exon:1 | 247 | Chr3: 1325759-1326005 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04820:five_prime_UTR:1 | 56 | Chr3: 1325950-1326005 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G04810 | locus:2114885 | NEK2 | NIMA-related kinase 2 | 4050 | Chr3: 1317245-1321294 | A. thaliana | NIMA-related kinase 2;(source:Araport11) | Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | NIMA-related kinase 2 | ATNEK2, NEK2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G04810.2 | 2328 | Chr3: 1317245-1321294 |
AT3G04810.1 | 2311 | Chr3: 1317254-1321269 |
AT3G04820.1 | 2429 | Chr3: 1321228-1326005 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04810:three_prime_UTR:2 | 193 | Chr3: 1321102-1321294 | Arabidopsis thaliana |
AT3G04810:three_prime_UTR:1 | 168 | Chr3: 1321102-1321269 | Arabidopsis thaliana |
AT3G04820:three_prime_UTR:1 | 225 | Chr3: 1321228-1321452 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A384KPV3_ARATH | similarity | Belongs to the pseudouridine synthase TruD family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
pseudouridine synthase activity | ECO |
RNA binding | ECO |
biological process | |
pseudouridine synthesis | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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