External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 26, Exons: 17, Five Prime UTRs: 8, Gene: 1, mRNAs: 5, Pseudogene: 1, Pseudogenic Exons: 6, Pseudogenic Transcripts: 2, Three Prime UTRs: 5
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04450:CDS:2 | 471 | Chr3: 1184422-1184892 | Arabidopsis thaliana |
AT3G04450:CDS:3 | 196 | Chr3: 1184984-1185179 | Arabidopsis thaliana |
AT3G04450:CDS:4 | 77 | Chr3: 1185272-1185348 | Arabidopsis thaliana |
AT3G04450:CDS:5 | 46 | Chr3: 1185428-1185473 | Arabidopsis thaliana |
AT3G04450:CDS:7 | 61 | Chr3: 1185616-1185676 | Arabidopsis thaliana |
AT3G04450:CDS:8 | 70 | Chr3: 1185773-1185842 | Arabidopsis thaliana |
AT3G04450:CDS:9 | 288 | Chr3: 1185977-1186264 | Arabidopsis thaliana |
AT3G04450:CDS:1 | 591 | Chr3: 1184302-1184892 | Arabidopsis thaliana |
AT3G04450:CDS:3.1 | 196 | Chr3: 1184984-1185179 | Arabidopsis thaliana |
AT3G04450:CDS:4.1 | 77 | Chr3: 1185272-1185348 | Arabidopsis thaliana |
AT3G04450:CDS:5.1 | 46 | Chr3: 1185428-1185473 | Arabidopsis thaliana |
AT3G04450:CDS:7.1 | 61 | Chr3: 1185616-1185676 | Arabidopsis thaliana |
AT3G04450:CDS:8.1 | 70 | Chr3: 1185773-1185842 | Arabidopsis thaliana |
AT3G04450:CDS:9.1 | 288 | Chr3: 1185977-1186264 | Arabidopsis thaliana |
AT3G04450:CDS:1.1 | 591 | Chr3: 1184302-1184892 | Arabidopsis thaliana |
AT3G04450:CDS:3.2 | 196 | Chr3: 1184984-1185179 | Arabidopsis thaliana |
AT3G04450:CDS:4.2 | 77 | Chr3: 1185272-1185348 | Arabidopsis thaliana |
AT3G04450:CDS:5.2 | 46 | Chr3: 1185428-1185473 | Arabidopsis thaliana |
AT3G04450:CDS:6 | 29 | Chr3: 1185599-1185627 | Arabidopsis thaliana |
AT3G04450:CDS:2.1 | 471 | Chr3: 1184422-1184892 | Arabidopsis thaliana |
AT3G04450:CDS:3.3 | 196 | Chr3: 1184984-1185179 | Arabidopsis thaliana |
AT3G04450:CDS:4.3 | 77 | Chr3: 1185272-1185348 | Arabidopsis thaliana |
AT3G04450:CDS:5.3 | 46 | Chr3: 1185428-1185473 | Arabidopsis thaliana |
AT3G04450:CDS:7.2 | 61 | Chr3: 1185616-1185676 | Arabidopsis thaliana |
AT3G04450:CDS:8.2 | 70 | Chr3: 1185773-1185842 | Arabidopsis thaliana |
AT3G04450:CDS:9.2 | 288 | Chr3: 1185977-1186264 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04450:exon:1 | 337 | Chr3: 1181706-1182042 | Arabidopsis thaliana |
AT3G04450:exon:2 | 69 | Chr3: 1182220-1182288 | Arabidopsis thaliana |
AT3G04450:exon:3 | 95 | Chr3: 1182453-1182547 | Arabidopsis thaliana |
AT3G04450:exon:4 | 46 | Chr3: 1182660-1182705 | Arabidopsis thaliana |
AT3G04450:exon:7 | 482 | Chr3: 1184411-1184892 | Arabidopsis thaliana |
AT3G04450:exon:16 | 468 | Chr3: 1185977-1186444 | Arabidopsis thaliana |
AT3G04450:exon:5 | 1414 | Chr3: 1183479-1184892 | Arabidopsis thaliana |
AT3G04450:exon:6 | 596 | Chr3: 1184297-1184892 | Arabidopsis thaliana |
AT3G04450:exon:12 | 78 | Chr3: 1185599-1185676 | Arabidopsis thaliana |
AT3G04450:exon:8 | 471 | Chr3: 1184422-1184892 | Arabidopsis thaliana |
AT3G04450:exon:9 | 196 | Chr3: 1184984-1185179 | Arabidopsis thaliana |
AT3G04450:exon:10 | 77 | Chr3: 1185272-1185348 | Arabidopsis thaliana |
AT3G04450:exon:11 | 46 | Chr3: 1185428-1185473 | Arabidopsis thaliana |
AT3G04450:exon:13 | 61 | Chr3: 1185616-1185676 | Arabidopsis thaliana |
AT3G04450:exon:14 | 70 | Chr3: 1185773-1185842 | Arabidopsis thaliana |
AT3G04450:exon:15 | 364 | Chr3: 1185977-1186340 | Arabidopsis thaliana |
AT3G04460:exon:1 | 309 | Chr3: 1186440-1186748 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04450:five_prime_UTR:1 | 337 | Chr3: 1181706-1182042 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:2 | 69 | Chr3: 1182220-1182288 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:3 | 95 | Chr3: 1182453-1182547 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:4 | 46 | Chr3: 1182660-1182705 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:7 | 11 | Chr3: 1184411-1184421 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:5 | 823 | Chr3: 1183479-1184301 | Arabidopsis thaliana |
AT3G04450:five_prime_UTR:6 | 5 | Chr3: 1184297-1184301 | Arabidopsis thaliana |
AT3G04460:five_prime_UTR:1 | 201 | Chr3: 1186440-1186640 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G04460 | locus:2100890 | PEX12 | peroxin-12 | 3069 | Chr3: 1186440-1189508 | A. thaliana | peroxin-12;(source:Araport11) | RING finger protein involved in peroxisome biogenesis. Also involved in peroxisomal import of nitric oxide synthase. Has been demonstrated to have E3 ubiquitin ligase activity. | peroxin-12 | APM4, ATPEX12, PEX12 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G04450.2 | 1947 | Chr3: 1181706-1186444 |
AT3G04450.1 | 2228 | Chr3: 1183479-1186340 |
AT3G04450.3 | 1427 | Chr3: 1184297-1186340 |
AT3G04450.4 | 1285 | Chr3: 1184422-1186340 |
AT3G04460.1 | 1790 | Chr3: 1186440-1189501 |
Pseudogenes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G04445 | locus:2830853 | AT3G04445 | 1133 | Chr3: 1181663-1182795 | A. thaliana | pseudogene of polyribonucleotide nucleotidyltransferase;(source:Araport11) | NULL | NULL |
Pseudogenic Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04445:pseudogenic_exon:1 | 380 | Chr3: 1181663-1182042 | Arabidopsis thaliana |
AT3G04445:pseudogenic_exon:4 | 95 | Chr3: 1182453-1182547 | Arabidopsis thaliana |
AT3G04445:pseudogenic_exon:6 | 128 | Chr3: 1182660-1182787 | Arabidopsis thaliana |
AT3G04445:pseudogenic_exon:2 | 362 | Chr3: 1181681-1182042 | Arabidopsis thaliana |
AT3G04445:pseudogenic_exon:3 | 69 | Chr3: 1182220-1182288 | Arabidopsis thaliana |
AT3G04445:pseudogenic_exon:5 | 343 | Chr3: 1182453-1182795 | Arabidopsis thaliana |
Pseudogenic Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G04445.2 | 1125 | Chr3: 1181663-1182787 |
AT3G04445.1 | 1115 | Chr3: 1181681-1182795 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G04450:three_prime_UTR:5 | 180 | Chr3: 1186265-1186444 | Arabidopsis thaliana |
AT3G04450:three_prime_UTR:1 | 49 | Chr3: 1185628-1185676 | Arabidopsis thaliana |
AT3G04450:three_prime_UTR:2 | 70 | Chr3: 1185773-1185842 | Arabidopsis thaliana |
AT3G04450:three_prime_UTR:3 | 364 | Chr3: 1185977-1186340 | Arabidopsis thaliana |
AT3G04450:three_prime_UTR:4 | 76 | Chr3: 1186265-1186340 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PHLD_ARATH A0A178VHS9_ARATH PHLD_ARATH-2 | similarity | Belongs to the MYB-CC family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA-binding transcription factor activity | ECO |
DNA binding | ECO |
biological process | |
regulation of DNA-templated transcription | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...