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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01920:CDS:1 | 308 | Chr3: 317449-317756 | Arabidopsis thaliana |
AT3G01920:CDS:2 | 54 | Chr3: 317838-317891 | Arabidopsis thaliana |
AT3G01920:CDS:3 | 25 | Chr3: 317992-318016 | Arabidopsis thaliana |
AT3G01920:CDS:4 | 123 | Chr3: 318113-318235 | Arabidopsis thaliana |
AT3G01920:CDS:5 | 167 | Chr3: 318342-318508 | Arabidopsis thaliana |
AT3G01920:CDS:7 | 250 | Chr3: 318599-318848 | Arabidopsis thaliana |
AT3G01920:CDS:9 | 78 | Chr3: 318924-319001 | Arabidopsis thaliana |
AT3G01920:CDS:1.1 | 308 | Chr3: 317449-317756 | Arabidopsis thaliana |
AT3G01920:CDS:2.1 | 54 | Chr3: 317838-317891 | Arabidopsis thaliana |
AT3G01920:CDS:3.1 | 25 | Chr3: 317992-318016 | Arabidopsis thaliana |
AT3G01920:CDS:4.1 | 123 | Chr3: 318113-318235 | Arabidopsis thaliana |
AT3G01920:CDS:5.1 | 167 | Chr3: 318342-318508 | Arabidopsis thaliana |
AT3G01920:CDS:6 | 70 | Chr3: 318599-318668 | Arabidopsis thaliana |
AT3G01920:CDS:8 | 99 | Chr3: 318750-318848 | Arabidopsis thaliana |
AT3G01920:CDS:9.1 | 78 | Chr3: 318924-319001 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01910:exon:1 | 232 | Chr3: 317200-317431 | Arabidopsis thaliana |
AT3G01920:exon:7 | 250 | Chr3: 318599-318848 | Arabidopsis thaliana |
AT3G01920:exon:9 | 78 | Chr3: 318924-319001 | Arabidopsis thaliana |
AT3G01920:exon:1 | 421 | Chr3: 317336-317756 | Arabidopsis thaliana |
AT3G01920:exon:2 | 54 | Chr3: 317838-317891 | Arabidopsis thaliana |
AT3G01920:exon:3 | 25 | Chr3: 317992-318016 | Arabidopsis thaliana |
AT3G01920:exon:4 | 123 | Chr3: 318113-318235 | Arabidopsis thaliana |
AT3G01920:exon:5 | 167 | Chr3: 318342-318508 | Arabidopsis thaliana |
AT3G01920:exon:6 | 70 | Chr3: 318599-318668 | Arabidopsis thaliana |
AT3G01920:exon:8 | 99 | Chr3: 318750-318848 | Arabidopsis thaliana |
AT3G01920:exon:10 | 198 | Chr3: 318924-319121 | Arabidopsis thaliana |
AT3G01930:exon:6 | 697 | Chr3: 319061-319757 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01910:five_prime_UTR:1 | 157 | Chr3: 317275-317431 | Arabidopsis thaliana |
AT3G01920:five_prime_UTR:1 | 113 | Chr3: 317336-317448 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G01910 | locus:2078683 | SOX | sulfite oxidase | 2739 | Chr3: 314693-317431 | A. thaliana | sulfite oxidase;(source:Araport11) | Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite. | sulfite oxidase | AT-SO, AtSO, SOX |
AT3G01930 | locus:2078643 | AT3G01930 | 2630 | Chr3: 319061-321690 | A. thaliana | Major facilitator superfamily protein;(source:Araport11) | NULL | Major facilitator superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G01910.1 | 1565 | Chr3: 314693-317431 |
AT3G01920.2 | 1118 | Chr3: 317336-319001 |
AT3G01920.1 | 1157 | Chr3: 317336-319121 |
AT3G01930.1 | 2530 | Chr3: 319061-321663 |
AT3G01930.2 | 2185 | Chr3: 319061-321690 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01920:three_prime_UTR:1 | 120 | Chr3: 319002-319121 | Arabidopsis thaliana |
AT3G01930:three_prime_UTR:1 | 228 | Chr3: 319061-319288 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
double-stranded RNA binding | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...