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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01540:CDS:8 | 136 | Chr3: 213077-213212 | Arabidopsis thaliana |
AT3G01540:CDS:7 | 309 | Chr3: 213311-213619 | Arabidopsis thaliana |
AT3G01540:CDS:6 | 278 | Chr3: 213716-213993 | Arabidopsis thaliana |
AT3G01540:CDS:5 | 351 | Chr3: 214070-214420 | Arabidopsis thaliana |
AT3G01540:CDS:4 | 270 | Chr3: 214520-214789 | Arabidopsis thaliana |
AT3G01540:CDS:3 | 69 | Chr3: 215401-215469 | Arabidopsis thaliana |
AT3G01540:CDS:2 | 159 | Chr3: 215615-215773 | Arabidopsis thaliana |
AT3G01540:CDS:1 | 288 | Chr3: 215855-216142 | Arabidopsis thaliana |
AT3G01540:CDS:8.1 | 136 | Chr3: 213077-213212 | Arabidopsis thaliana |
AT3G01540:CDS:7.1 | 309 | Chr3: 213311-213619 | Arabidopsis thaliana |
AT3G01540:CDS:6.1 | 278 | Chr3: 213716-213993 | Arabidopsis thaliana |
AT3G01540:CDS:5.1 | 351 | Chr3: 214070-214420 | Arabidopsis thaliana |
AT3G01540:CDS:4.1 | 270 | Chr3: 214520-214789 | Arabidopsis thaliana |
AT3G01540:CDS:3.1 | 69 | Chr3: 215401-215469 | Arabidopsis thaliana |
AT3G01540:CDS:2.1 | 159 | Chr3: 215615-215773 | Arabidopsis thaliana |
AT3G01540:CDS:1.1 | 288 | Chr3: 215855-216142 | Arabidopsis thaliana |
AT3G01540:CDS:9 | 133 | Chr3: 213077-213209 | Arabidopsis thaliana |
AT3G01540:CDS:7.2 | 309 | Chr3: 213311-213619 | Arabidopsis thaliana |
AT3G01540:CDS:6.2 | 278 | Chr3: 213716-213993 | Arabidopsis thaliana |
AT3G01540:CDS:5.2 | 351 | Chr3: 214070-214420 | Arabidopsis thaliana |
AT3G01540:CDS:4.2 | 270 | Chr3: 214520-214789 | Arabidopsis thaliana |
AT3G01540:CDS:3.2 | 69 | Chr3: 215401-215469 | Arabidopsis thaliana |
AT3G01540:CDS:2.2 | 159 | Chr3: 215615-215773 | Arabidopsis thaliana |
AT3G01540:CDS:1.2 | 288 | Chr3: 215855-216142 | Arabidopsis thaliana |
AT3G01540:CDS:8.2 | 136 | Chr3: 213077-213212 | Arabidopsis thaliana |
AT3G01540:CDS:7.3 | 309 | Chr3: 213311-213619 | Arabidopsis thaliana |
AT3G01540:CDS:6.3 | 278 | Chr3: 213716-213993 | Arabidopsis thaliana |
AT3G01540:CDS:5.3 | 351 | Chr3: 214070-214420 | Arabidopsis thaliana |
AT3G01540:CDS:4.3 | 270 | Chr3: 214520-214789 | Arabidopsis thaliana |
AT3G01540:CDS:3.3 | 69 | Chr3: 215401-215469 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01540:exon:17 | 6 | Chr3: 212518-212523 | Arabidopsis thaliana |
AT3G01540:exon:13 | 350 | Chr3: 212863-213212 | Arabidopsis thaliana |
AT3G01540:exon:3 | 198 | Chr3: 216474-216671 | Arabidopsis thaliana |
AT3G01540:exon:16 | 542 | Chr3: 212671-213212 | Arabidopsis thaliana |
AT3G01540:exon:1 | 263 | Chr3: 216474-216736 | Arabidopsis thaliana |
AT3G01540:exon:15 | 531 | Chr3: 212679-213209 | Arabidopsis thaliana |
AT3G01540:exon:5 | 299 | Chr3: 215855-216153 | Arabidopsis thaliana |
AT3G01540:exon:2 | 241 | Chr3: 216474-216714 | Arabidopsis thaliana |
AT3G01540:exon:14 | 462 | Chr3: 212751-213212 | Arabidopsis thaliana |
AT3G01540:exon:12 | 309 | Chr3: 213311-213619 | Arabidopsis thaliana |
AT3G01540:exon:11 | 278 | Chr3: 213716-213993 | Arabidopsis thaliana |
AT3G01540:exon:10 | 351 | Chr3: 214070-214420 | Arabidopsis thaliana |
AT3G01540:exon:9 | 270 | Chr3: 214520-214789 | Arabidopsis thaliana |
AT3G01540:exon:8 | 69 | Chr3: 215401-215469 | Arabidopsis thaliana |
AT3G01540:exon:7 | 159 | Chr3: 215615-215773 | Arabidopsis thaliana |
AT3G01540:exon:6 | 296 | Chr3: 215855-216150 | Arabidopsis thaliana |
AT3G01540:exon:4 | 193 | Chr3: 216474-216666 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01540:five_prime_UTR:3 | 198 | Chr3: 216474-216671 | Arabidopsis thaliana |
AT3G01540:five_prime_UTR:1 | 263 | Chr3: 216474-216736 | Arabidopsis thaliana |
AT3G01540:five_prime_UTR:5 | 11 | Chr3: 216143-216153 | Arabidopsis thaliana |
AT3G01540:five_prime_UTR:2 | 241 | Chr3: 216474-216714 | Arabidopsis thaliana |
AT3G01540:five_prime_UTR:6 | 8 | Chr3: 216143-216150 | Arabidopsis thaliana |
AT3G01540:five_prime_UTR:4 | 193 | Chr3: 216474-216666 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G01540.4 | 2289 | Chr3: 212518-216671 |
AT3G01540.2 | 2540 | Chr3: 212671-216736 |
AT3G01540.1 | 2507 | Chr3: 212679-216714 |
AT3G01540.3 | 2387 | Chr3: 212751-216666 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G01540:three_prime_UTR:5 | 6 | Chr3: 212518-212523 | Arabidopsis thaliana |
AT3G01540:three_prime_UTR:1 | 214 | Chr3: 212863-213076 | Arabidopsis thaliana |
AT3G01540:three_prime_UTR:4 | 406 | Chr3: 212671-213076 | Arabidopsis thaliana |
AT3G01540:three_prime_UTR:3 | 398 | Chr3: 212679-213076 | Arabidopsis thaliana |
AT3G01540:three_prime_UTR:2 | 326 | Chr3: 212751-213076 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RH14_ARATH RH14_ARATH-2 | function | ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. |
RH14_ARATH RH14_ARATH-2 | similarity | Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily. |
RH14_ARATH RH14_ARATH-2 | tissue specificity | Ubiquitous. Preferentially expressed in flowers and roots. |