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Gene : PAC A. thaliana

DB identifier  ? AT2G48120 Secondary Identifier  ? locus:2039361
Name  ? PALE CRESS Brief Description  pale cress protein (PAC)
TAIR Computational Description  pale cress protein (PAC);(source:Araport11)
TAIR Curator Summary  The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC binds 23srRNA and appears to be required for 50s ribosome assembly. Three alternative transcripts of this gene exist.PAC is essential for photoautotrophic growth and associates with psbK-psbI, ndhF, ndhD, and 23S ribosomal RNA in vivo(PMID:28805278)
TAIR Short Description  pale cress protein (PAC)
TAIR Aliases  PAC

2 Gene Rifs

1 Organism

13 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1817  
Location: Chr2:19679730-19681546

Gene models - PAC AT2G48120

? Gene models

Transcripts: 2  Exons: 14  Introns: 12 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PAC_ARATH PAC_ARATH-2 function Required for the differentiation of chloroplast from proplastids or etioplasts, probably by modulating some chloroplast-encoded genes expression and mRNA maturation. Involved in leaf-cells differentiation.
PAC_ARATH PAC_ARATH-2 subcellular location Present in thin tubular projections emanating from plastids and often connecting organelles each other.
PAC_ARATH PAC_ARATH-2 tissue specificity Expressed in green tissues, including leaves. Accumulates in chloroplasts of mature stomatal guard cells.

2 Proteins

Function

Gene Ontology

cellular component
chloroplast nucleoid  ? ECO  
etioplast  ? ECO  
chloroplast stroma  ? ECO  
amyloplast  ? ECO  
proplastid  ? ECO  
chromoplast  ? ECO  
chloroplast  ? ECO  
molecular function
rRNA binding  ? ECO  
RNA binding  ? ECO  
biological process
leaf morphogenesis  ? ECO  
chloroplast organization  ? ECO  
chloroplast mRNA processing  ? ECO  
ribosome biogenesis  ? ECO  
cellular response to light stimulus  ? ECO  
RNA metabolic process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets