help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403

Gene : SETH6 A. thaliana

DB identifier  ? AT2G47860 Secondary Identifier  ? locus:2043388
Brief Description  Phototropic-responsive NPH3 family protein
TAIR Computational Description  Phototropic-responsive NPH3 family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Phototropic-responsive NPH3 family protein
TAIR Aliases  SETH6

0 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2627  
Location: Chr2:19599686-19602312

Gene models - SETH6 AT2G47860

? Gene models

Transcripts: 6  Exons: 17  Introns: 11 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SETH6_ARATH function May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
F4IM54_ARATH SETH6_ARATH A0A1P8B0G5_ARATH A0A1P8B0E1_ARATH pathway Protein modification; protein ubiquitination.
F4IM56_ARATH F4IM54_ARATH SETH6_ARATH A0A1P8B0G5_ARATH A0A1P8B0E1_ARATH similarity Belongs to the NPH3 family.

5 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
No terms in this category.
biological process
protein ubiquitination  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets