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Gene : UBQ6 A. thaliana

DB identifier  ? AT2G47110 Secondary Identifier  ? locus:2041459
Name  ? ubiquitin 6 Brief Description  ubiquitin 6
TAIR Computational Description  ubiquitin 6;(source:Araport11)
TAIR Curator Summary  polyubiquitin gene The mRNA is cell-to-cell mobile.
TAIR Short Description  ubiquitin 6
TAIR Aliases  RPS27aB, UBI6, UBQ6

0 Gene Rifs

1 Organism

21 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 711  
Location: Chr2:19344635-19345345

Gene models - UBQ6 AT2G47110

? Gene models

Transcripts: 2  Exons: 3  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
R27AB_ARATH function Component of the 40S subunit of the ribosome.
R27AB_ARATH function Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
R27AB_ARATH similarity In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.
R27AB_ARATH similarity In the N-terminal section; belongs to the ubiquitin family.

1 Proteins

Function

Gene Ontology

cellular component
cytosolic small ribosomal subunit  ? ECO  
cytosol  ? ECO  
Golgi apparatus  ? ECO  
nucleus  ? ECO  
molecular function
ubiquitin protein ligase binding  ? ECO  
mRNA binding  ? ECO  
structural constituent of ribosome  ? ECO  
metal ion binding  ? ECO  
protein tag activity  ? ECO  
biological process
protein ubiquitination  ? ECO  
ubiquitin-dependent protein catabolic process  ? ECO  
modification-dependent protein catabolic process  ? ECO  
translation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets