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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46980:CDS:14 | 63 | Chr2: 19299868-19299930 | Arabidopsis thaliana |
AT2G46980:CDS:12 | 92 | Chr2: 19300026-19300117 | Arabidopsis thaliana |
AT2G46980:CDS:9 | 135 | Chr2: 19300296-19300430 | Arabidopsis thaliana |
AT2G46980:CDS:7 | 59 | Chr2: 19300903-19300961 | Arabidopsis thaliana |
AT2G46980:CDS:6 | 150 | Chr2: 19301035-19301184 | Arabidopsis thaliana |
AT2G46980:CDS:5 | 70 | Chr2: 19301267-19301336 | Arabidopsis thaliana |
AT2G46980:CDS:4 | 132 | Chr2: 19301415-19301546 | Arabidopsis thaliana |
AT2G46980:CDS:3 | 148 | Chr2: 19301651-19301798 | Arabidopsis thaliana |
AT2G46980:CDS:1 | 1533 | Chr2: 19301897-19303429 | Arabidopsis thaliana |
AT2G46980:CDS:10 | 197 | Chr2: 19300234-19300430 | Arabidopsis thaliana |
AT2G46980:CDS:7.1 | 59 | Chr2: 19300903-19300961 | Arabidopsis thaliana |
AT2G46980:CDS:6.1 | 150 | Chr2: 19301035-19301184 | Arabidopsis thaliana |
AT2G46980:CDS:5.1 | 70 | Chr2: 19301267-19301336 | Arabidopsis thaliana |
AT2G46980:CDS:4.1 | 132 | Chr2: 19301415-19301546 | Arabidopsis thaliana |
AT2G46980:CDS:3.1 | 148 | Chr2: 19301651-19301798 | Arabidopsis thaliana |
AT2G46980:CDS:1.1 | 1533 | Chr2: 19301897-19303429 | Arabidopsis thaliana |
AT2G46980:CDS:13 | 116 | Chr2: 19300002-19300117 | Arabidopsis thaliana |
AT2G46980:CDS:9.1 | 135 | Chr2: 19300296-19300430 | Arabidopsis thaliana |
AT2G46980:CDS:7.2 | 59 | Chr2: 19300903-19300961 | Arabidopsis thaliana |
AT2G46980:CDS:6.2 | 150 | Chr2: 19301035-19301184 | Arabidopsis thaliana |
AT2G46980:CDS:5.2 | 70 | Chr2: 19301267-19301336 | Arabidopsis thaliana |
AT2G46980:CDS:4.2 | 132 | Chr2: 19301415-19301546 | Arabidopsis thaliana |
AT2G46980:CDS:3.2 | 148 | Chr2: 19301651-19301798 | Arabidopsis thaliana |
AT2G46980:CDS:1.2 | 1533 | Chr2: 19301897-19303429 | Arabidopsis thaliana |
AT2G46980:CDS:8 | 133 | Chr2: 19300829-19300961 | Arabidopsis thaliana |
AT2G46980:CDS:6.3 | 150 | Chr2: 19301035-19301184 | Arabidopsis thaliana |
AT2G46980:CDS:5.3 | 70 | Chr2: 19301267-19301336 | Arabidopsis thaliana |
AT2G46980:CDS:4.3 | 132 | Chr2: 19301415-19301546 | Arabidopsis thaliana |
AT2G46980:CDS:3.3 | 148 | Chr2: 19301651-19301798 | Arabidopsis thaliana |
AT2G46980:CDS:1.3 | 1533 | Chr2: 19301897-19303429 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46980:exon:17 | 439 | Chr2: 19299492-19299930 | Arabidopsis thaliana |
AT2G46980:exon:13 | 92 | Chr2: 19300026-19300117 | Arabidopsis thaliana |
AT2G46980:exon:1 | 309 | Chr2: 19303963-19304271 | Arabidopsis thaliana |
AT2G46980:exon:15 | 928 | Chr2: 19299503-19300430 | Arabidopsis thaliana |
AT2G46980:exon:16 | 615 | Chr2: 19299503-19300117 | Arabidopsis thaliana |
AT2G46980:exon:10 | 666 | Chr2: 19300296-19300961 | Arabidopsis thaliana |
AT2G46980:exon:14 | 228 | Chr2: 19299703-19299930 | Arabidopsis thaliana |
AT2G46980:exon:12 | 83 | Chr2: 19300035-19300117 | Arabidopsis thaliana |
AT2G46980:exon:11 | 135 | Chr2: 19300296-19300430 | Arabidopsis thaliana |
AT2G46980:exon:9 | 59 | Chr2: 19300903-19300961 | Arabidopsis thaliana |
AT2G46980:exon:8 | 150 | Chr2: 19301035-19301184 | Arabidopsis thaliana |
AT2G46980:exon:7 | 70 | Chr2: 19301267-19301336 | Arabidopsis thaliana |
AT2G46980:exon:6 | 132 | Chr2: 19301415-19301546 | Arabidopsis thaliana |
AT2G46980:exon:5 | 148 | Chr2: 19301651-19301798 | Arabidopsis thaliana |
AT2G46980:exon:3 | 1539 | Chr2: 19301897-19303435 | Arabidopsis thaliana |
AT2G46980:exon:2 | 229 | Chr2: 19303963-19304191 | Arabidopsis thaliana |
AT2G46980:exon:4 | 1593 | Chr2: 19301867-19303459 | Arabidopsis thaliana |
AT2G09770:exon:1 | 268 | Chr2: 19304256-19304523 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46980:five_prime_UTR:1 | 309 | Chr2: 19303963-19304271 | Arabidopsis thaliana |
AT2G46980:five_prime_UTR:4 | 6 | Chr2: 19303430-19303435 | Arabidopsis thaliana |
AT2G46980:five_prime_UTR:2 | 229 | Chr2: 19303963-19304191 | Arabidopsis thaliana |
AT2G46980:five_prime_UTR:3 | 30 | Chr2: 19303430-19303459 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G09770 | AT2G09770 | 268 | Chr2: 19304256-19304523 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G46980.2 | 3073 | Chr2: 19299492-19304271 |
AT2G46980.5 | 3255 | Chr2: 19299503-19304191 |
AT2G46980.6 | 3077 | Chr2: 19299503-19304191 |
AT2G46980.4 | 3549 | Chr2: 19299503-19304191 |
AT2G46980.3 | 2773 | Chr2: 19299703-19304191 |
AT2G46980.1 | 1593 | Chr2: 19301867-19303459 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G46980:three_prime_UTR:7 | 376 | Chr2: 19299492-19299867 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:4 | 731 | Chr2: 19299503-19300233 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:6 | 499 | Chr2: 19299503-19300001 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:5 | 615 | Chr2: 19299503-19300117 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:2 | 533 | Chr2: 19300296-19300828 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:3 | 165 | Chr2: 19299703-19299867 | Arabidopsis thaliana |
AT2G46980:three_prime_UTR:1 | 12 | Chr2: 19301867-19301878 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ASY3_ARATH ASY3_ARATH-2 | function | Required for normal meiosis in male and female gametophytes. Acts with ASY1 at the interface between the developing chromosome axes and the recombination machinery to ensure interhomolog recombination. Required for synaptonemal complex formation during meiosis. |
ASY3_ARATH ASY3_ARATH-2 | subcellular location | During interphase-early leptotene, distributed as numerous punctuate foci throughout the chromatin. At zygotene and pachytene, shows a continuous localization along chromosomal axes. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
chromosome | ECO |
molecular function | |
No terms in this category. | |
biological process | |
meiotic cell cycle | ECO |
regulation of synaptonemal complex assembly | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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