External Links
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- EnsemblPlants
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- ATTED-II
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Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
AT2G45720.1
AT2G45720.1
2317 |
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AT2G45720.3
AT2G45720.3
2032 |
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AT2G45720.2
AT2G45720.2
2329 |
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AT2G45720.4
AT2G45720.4
1917 |
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AT2G45720.5
AT2G45720.5
1981 |
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Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 5, Exons: 10, Five Prime UTRs: 6, Genes: 2, mRNAs: 6, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G45720:CDS:1 | 1662 | Chr2: 18834468-18836129 | Arabidopsis thaliana |
AT2G45720:CDS:1.1 | 1662 | Chr2: 18834468-18836129 | Arabidopsis thaliana |
AT2G45720:CDS:1.2 | 1662 | Chr2: 18834468-18836129 | Arabidopsis thaliana |
AT2G45720:CDS:1.3 | 1662 | Chr2: 18834468-18836129 | Arabidopsis thaliana |
AT2G45720:CDS:1.4 | 1662 | Chr2: 18834468-18836129 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G45720:exon:1 | 457 | Chr2: 18833086-18833542 | Arabidopsis thaliana |
AT2G45720:exon:8 | 1860 | Chr2: 18834432-18836291 | Arabidopsis thaliana |
AT2G45720:exon:3 | 334 | Chr2: 18834011-18834344 | Arabidopsis thaliana |
AT2G45720:exon:2 | 103 | Chr2: 18834011-18834113 | Arabidopsis thaliana |
AT2G45720:exon:6 | 2226 | Chr2: 18834149-18836374 | Arabidopsis thaliana |
AT2G45720:exon:4 | 219 | Chr2: 18834104-18834322 | Arabidopsis thaliana |
AT2G45720:exon:7 | 1698 | Chr2: 18834432-18836129 | Arabidopsis thaliana |
AT2G45720:exon:5 | 1981 | Chr2: 18834149-18836129 | Arabidopsis thaliana |
AT2G09660:exon:1 | 753 | Chr2: 18834709-18835461 | Arabidopsis thaliana |
AT2G45730:exon:13 | 342 | Chr2: 18836264-18836605 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G45720:five_prime_UTR:1 | 457 | Chr2: 18833086-18833542 | Arabidopsis thaliana |
AT2G45720:five_prime_UTR:3 | 334 | Chr2: 18834011-18834344 | Arabidopsis thaliana |
AT2G45720:five_prime_UTR:2 | 103 | Chr2: 18834011-18834113 | Arabidopsis thaliana |
AT2G45720:five_prime_UTR:4 | 219 | Chr2: 18834104-18834322 | Arabidopsis thaliana |
AT2G45720:five_prime_UTR:6 | 36 | Chr2: 18834432-18834467 | Arabidopsis thaliana |
AT2G45720:five_prime_UTR:5 | 319 | Chr2: 18834149-18834467 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G09660 | AT2G09660 | 753 | Chr2: 18834709-18835461 | A. thaliana | Natural antisense transcript overlaps with AT2G45720;(source:Araport11) | NULL | ||||
AT2G45730 | locus:2043714 | AT2G45730 | 3010 | Chr2: 18836264-18839273 | A. thaliana | eukaryotic initiation factor 3 gamma subunit family protein;(source:Araport11) | Part of complex with TRM61, plays a critical role in maintaining the stability of initiator methionyl-tRNA, embryo and endosperm development. In the complex TRM61 functions as the catalytic subunit, and TRM6 performs the role of the binding subunit. | eukaryotic initiation factor 3 gamma subunit family protein | AtTRM6, TRM6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G45720.1 | 2317 | Chr2: 18833086-18836291 |
AT2G45720.3 | 2032 | Chr2: 18834011-18836129 |
AT2G45720.2 | 2329 | Chr2: 18834011-18836374 |
AT2G45720.4 | 1917 | Chr2: 18834104-18836129 |
AT2G45720.5 | 1981 | Chr2: 18834149-18836129 |
AT2G45730.1 | 1746 | Chr2: 18836264-18839273 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G45720:three_prime_UTR:1 | 162 | Chr2: 18836130-18836291 | Arabidopsis thaliana |
AT2G45720:three_prime_UTR:2 | 245 | Chr2: 18836130-18836374 | Arabidopsis thaliana |
AT2G45730:three_prime_UTR:1 | 255 | Chr2: 18836264-18836518 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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