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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43180:CDS:10 | 6 | Chr2: 17953832-17953837 | Arabidopsis thaliana |
AT2G43180:CDS:7 | 311 | Chr2: 17953921-17954231 | Arabidopsis thaliana |
AT2G43180:CDS:4 | 139 | Chr2: 17954313-17954451 | Arabidopsis thaliana |
AT2G43180:CDS:3 | 123 | Chr2: 17954537-17954659 | Arabidopsis thaliana |
AT2G43180:CDS:2 | 488 | Chr2: 17954748-17955235 | Arabidopsis thaliana |
AT2G43180:CDS:1 | 334 | Chr2: 17955441-17955774 | Arabidopsis thaliana |
AT2G43180:CDS:9 | 35 | Chr2: 17953832-17953866 | Arabidopsis thaliana |
AT2G43180:CDS:8 | 37 | Chr2: 17953921-17953957 | Arabidopsis thaliana |
AT2G43180:CDS:5 | 200 | Chr2: 17954032-17954231 | Arabidopsis thaliana |
AT2G43180:CDS:4.1 | 139 | Chr2: 17954313-17954451 | Arabidopsis thaliana |
AT2G43180:CDS:3.1 | 123 | Chr2: 17954537-17954659 | Arabidopsis thaliana |
AT2G43180:CDS:2.1 | 488 | Chr2: 17954748-17955235 | Arabidopsis thaliana |
AT2G43180:CDS:1.1 | 334 | Chr2: 17955441-17955774 | Arabidopsis thaliana |
AT2G43180:CDS:11 | 119 | Chr2: 17953719-17953837 | Arabidopsis thaliana |
AT2G43180:CDS:8.1 | 37 | Chr2: 17953921-17953957 | Arabidopsis thaliana |
AT2G43180:CDS:6 | 197 | Chr2: 17954032-17954228 | Arabidopsis thaliana |
AT2G43180:CDS:4.2 | 139 | Chr2: 17954313-17954451 | Arabidopsis thaliana |
AT2G43180:CDS:3.2 | 123 | Chr2: 17954537-17954659 | Arabidopsis thaliana |
AT2G43180:CDS:2.2 | 488 | Chr2: 17954748-17955235 | Arabidopsis thaliana |
AT2G43180:CDS:1.2 | 334 | Chr2: 17955441-17955774 | Arabidopsis thaliana |
AT2G43180:CDS:11.1 | 119 | Chr2: 17953719-17953837 | Arabidopsis thaliana |
AT2G43180:CDS:8.2 | 37 | Chr2: 17953921-17953957 | Arabidopsis thaliana |
AT2G43180:CDS:5.1 | 200 | Chr2: 17954032-17954231 | Arabidopsis thaliana |
AT2G43180:CDS:4.3 | 139 | Chr2: 17954313-17954451 | Arabidopsis thaliana |
AT2G43180:CDS:3.3 | 123 | Chr2: 17954537-17954659 | Arabidopsis thaliana |
AT2G43180:CDS:2.3 | 488 | Chr2: 17954748-17955235 | Arabidopsis thaliana |
AT2G43180:CDS:1.3 | 334 | Chr2: 17955441-17955774 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43160:exon:23 | 761 | Chr2: 17952909-17953669 | Arabidopsis thaliana |
AT2G43160:exon:22 | 890 | Chr2: 17952780-17953669 | Arabidopsis thaliana |
AT2G43180:exon:9 | 311 | Chr2: 17953921-17954231 | Arabidopsis thaliana |
AT2G43180:exon:11 | 370 | Chr2: 17953497-17953866 | Arabidopsis thaliana |
AT2G43180:exon:3 | 358 | Chr2: 17955441-17955798 | Arabidopsis thaliana |
AT2G43180:exon:8 | 197 | Chr2: 17954032-17954228 | Arabidopsis thaliana |
AT2G43180:exon:2 | 380 | Chr2: 17955441-17955820 | Arabidopsis thaliana |
AT2G43180:exon:12 | 341 | Chr2: 17953497-17953837 | Arabidopsis thaliana |
AT2G43180:exon:10 | 37 | Chr2: 17953921-17953957 | Arabidopsis thaliana |
AT2G43180:exon:7 | 200 | Chr2: 17954032-17954231 | Arabidopsis thaliana |
AT2G43180:exon:6 | 139 | Chr2: 17954313-17954451 | Arabidopsis thaliana |
AT2G43180:exon:5 | 123 | Chr2: 17954537-17954659 | Arabidopsis thaliana |
AT2G43180:exon:4 | 488 | Chr2: 17954748-17955235 | Arabidopsis thaliana |
AT2G43180:exon:1 | 389 | Chr2: 17955441-17955829 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43180:five_prime_UTR:3 | 24 | Chr2: 17955775-17955798 | Arabidopsis thaliana |
AT2G43180:five_prime_UTR:2 | 46 | Chr2: 17955775-17955820 | Arabidopsis thaliana |
AT2G43180:five_prime_UTR:1 | 55 | Chr2: 17955775-17955829 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G43160 | locus:2040981 | AT2G43160 | 5870 | Chr2: 17947800-17953669 | A. thaliana | ENTH/VHS family protein;(source:Araport11) | Involved in plant trans-Golgi network (TGN) transport. | ENTH/VHS family protein | EPS2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G43160.1 | 3647 | Chr2: 17947800-17953669 |
AT2G43160.3 | 3618 | Chr2: 17947800-17953669 |
AT2G43160.4 | 2985 | Chr2: 17948062-17953669 |
AT2G43160.2 | 3345 | Chr2: 17948084-17953669 |
AT2G43180.4 | 1760 | Chr2: 17953497-17955798 |
AT2G43180.2 | 1715 | Chr2: 17953497-17955798 |
AT2G43180.3 | 1705 | Chr2: 17953497-17955820 |
AT2G43180.1 | 1717 | Chr2: 17953497-17955829 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43160:three_prime_UTR:1 | 749 | Chr2: 17952921-17953669 | Arabidopsis thaliana |
AT2G43160:three_prime_UTR:2 | 402 | Chr2: 17953268-17953669 | Arabidopsis thaliana |
AT2G43180:three_prime_UTR:1 | 335 | Chr2: 17953497-17953831 | Arabidopsis thaliana |
AT2G43180:three_prime_UTR:2 | 222 | Chr2: 17953497-17953718 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
molecular function | |
catalytic activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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