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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 56, Exons: 20, Five Prime UTRs: 4, mRNAs: 4, Three Prime UTRs: 3, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43070:CDS:16 | 110 | Chr2: 17911233-17911342 | Arabidopsis thaliana |
AT2G43070:CDS:15 | 84 | Chr2: 17911439-17911522 | Arabidopsis thaliana |
AT2G43070:CDS:14 | 71 | Chr2: 17911714-17911784 | Arabidopsis thaliana |
AT2G43070:CDS:13 | 143 | Chr2: 17911932-17912074 | Arabidopsis thaliana |
AT2G43070:CDS:12 | 93 | Chr2: 17912413-17912505 | Arabidopsis thaliana |
AT2G43070:CDS:11 | 54 | Chr2: 17912578-17912631 | Arabidopsis thaliana |
AT2G43070:CDS:10 | 157 | Chr2: 17912835-17912991 | Arabidopsis thaliana |
AT2G43070:CDS:9 | 35 | Chr2: 17913077-17913111 | Arabidopsis thaliana |
AT2G43070:CDS:8 | 180 | Chr2: 17913213-17913392 | Arabidopsis thaliana |
AT2G43070:CDS:6 | 155 | Chr2: 17913608-17913762 | Arabidopsis thaliana |
AT2G43070:CDS:5 | 120 | Chr2: 17913884-17914003 | Arabidopsis thaliana |
AT2G43070:CDS:4 | 112 | Chr2: 17914094-17914205 | Arabidopsis thaliana |
AT2G43070:CDS:3 | 159 | Chr2: 17914335-17914493 | Arabidopsis thaliana |
AT2G43070:CDS:2 | 150 | Chr2: 17914627-17914776 | Arabidopsis thaliana |
AT2G43070:CDS:16.1 | 110 | Chr2: 17911233-17911342 | Arabidopsis thaliana |
AT2G43070:CDS:15.1 | 84 | Chr2: 17911439-17911522 | Arabidopsis thaliana |
AT2G43070:CDS:14.1 | 71 | Chr2: 17911714-17911784 | Arabidopsis thaliana |
AT2G43070:CDS:13.1 | 143 | Chr2: 17911932-17912074 | Arabidopsis thaliana |
AT2G43070:CDS:12.1 | 93 | Chr2: 17912413-17912505 | Arabidopsis thaliana |
AT2G43070:CDS:11.1 | 54 | Chr2: 17912578-17912631 | Arabidopsis thaliana |
AT2G43070:CDS:10.1 | 157 | Chr2: 17912835-17912991 | Arabidopsis thaliana |
AT2G43070:CDS:9.1 | 35 | Chr2: 17913077-17913111 | Arabidopsis thaliana |
AT2G43070:CDS:8.1 | 180 | Chr2: 17913213-17913392 | Arabidopsis thaliana |
AT2G43070:CDS:7 | 173 | Chr2: 17913590-17913762 | Arabidopsis thaliana |
AT2G43070:CDS:5.1 | 120 | Chr2: 17913884-17914003 | Arabidopsis thaliana |
AT2G43070:CDS:4.1 | 112 | Chr2: 17914094-17914205 | Arabidopsis thaliana |
AT2G43070:CDS:3.1 | 159 | Chr2: 17914335-17914493 | Arabidopsis thaliana |
AT2G43070:CDS:2.1 | 150 | Chr2: 17914627-17914776 | Arabidopsis thaliana |
AT2G43070:CDS:16.2 | 110 | Chr2: 17911233-17911342 | Arabidopsis thaliana |
AT2G43070:CDS:15.2 | 84 | Chr2: 17911439-17911522 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43070:exon:20 | 820 | Chr2: 17910523-17911342 | Arabidopsis thaliana |
AT2G43070:exon:4 | 264 | Chr2: 17914627-17914890 | Arabidopsis thaliana |
AT2G43070:exon:19 | 509 | Chr2: 17910834-17911342 | Arabidopsis thaliana |
AT2G43070:exon:3 | 306 | Chr2: 17914627-17914932 | Arabidopsis thaliana |
AT2G43070:exon:9 | 173 | Chr2: 17913590-17913762 | Arabidopsis thaliana |
AT2G43070:exon:2 | 339 | Chr2: 17914627-17914965 | Arabidopsis thaliana |
AT2G43070:exon:18 | 455 | Chr2: 17910888-17911342 | Arabidopsis thaliana |
AT2G43070:exon:17 | 84 | Chr2: 17911439-17911522 | Arabidopsis thaliana |
AT2G43070:exon:16 | 71 | Chr2: 17911714-17911784 | Arabidopsis thaliana |
AT2G43070:exon:15 | 143 | Chr2: 17911932-17912074 | Arabidopsis thaliana |
AT2G43070:exon:14 | 93 | Chr2: 17912413-17912505 | Arabidopsis thaliana |
AT2G43070:exon:13 | 54 | Chr2: 17912578-17912631 | Arabidopsis thaliana |
AT2G43070:exon:12 | 157 | Chr2: 17912835-17912991 | Arabidopsis thaliana |
AT2G43070:exon:11 | 35 | Chr2: 17913077-17913111 | Arabidopsis thaliana |
AT2G43070:exon:10 | 180 | Chr2: 17913213-17913392 | Arabidopsis thaliana |
AT2G43070:exon:8 | 155 | Chr2: 17913608-17913762 | Arabidopsis thaliana |
AT2G43070:exon:7 | 120 | Chr2: 17913884-17914003 | Arabidopsis thaliana |
AT2G43070:exon:6 | 112 | Chr2: 17914094-17914205 | Arabidopsis thaliana |
AT2G43070:exon:5 | 159 | Chr2: 17914335-17914493 | Arabidopsis thaliana |
AT2G43070:exon:1 | 383 | Chr2: 17914627-17915009 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43070:five_prime_UTR:4 | 114 | Chr2: 17914777-17914890 | Arabidopsis thaliana |
AT2G43070:five_prime_UTR:3 | 156 | Chr2: 17914777-17914932 | Arabidopsis thaliana |
AT2G43070:five_prime_UTR:2 | 12 | Chr2: 17914954-17914965 | Arabidopsis thaliana |
AT2G43070:five_prime_UTR:1 | 56 | Chr2: 17914954-17915009 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G43070.1 | 2447 | Chr2: 17910523-17914890 |
AT2G43070.2 | 2196 | Chr2: 17910834-17914932 |
AT2G43070.4 | 2175 | Chr2: 17910888-17914965 |
AT2G43070.3 | 2201 | Chr2: 17910888-17915009 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G43070:three_prime_UTR:3 | 710 | Chr2: 17910523-17911232 | Arabidopsis thaliana |
AT2G43070:three_prime_UTR:2 | 399 | Chr2: 17910834-17911232 | Arabidopsis thaliana |
AT2G43070:three_prime_UTR:1 | 345 | Chr2: 17910888-17911232 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE81045 | 387 | Chr2: 17910144-17910530 | Arabidopsis thaliana |
AT2TE81055 | 49 | Chr2: 17914064-17914112 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE81045:transposon_fragment:1 | 387 | Chr2: 17910144-17910530 | Arabidopsis thaliana |
AT2TE81055:transposon_fragment:1 | 49 | Chr2: 17914064-17914112 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SIPL3_ARATH | developmental stage | Expressed in the shoot meristem and root epidermal cells in germinating seeds. |
A0A1P8B2Y1_ARATH A0A1P8B2Y2_ARATH SIPL3_ARATH A0A1P8B2Y7_ARATH | function | Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. |
A0A1P8B2Y1_ARATH A0A1P8B2Y2_ARATH SIPL3_ARATH A0A1P8B2Y7_ARATH | similarity | Belongs to the peptidase A22B family. |
SIPL3_ARATH | tissue specificity | Ubiquitous. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
endosome | ECO |
endosome membrane | ECO |
molecular function | |
aspartic endopeptidase activity, intramembrane cleaving | ECO |
biological process | |
proteolysis | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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