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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G42130:CDS:1 | 234 | Chr2: 17566242-17566475 | Arabidopsis thaliana |
AT2G42130:CDS:4 | 122 | Chr2: 17566811-17566932 | Arabidopsis thaliana |
AT2G42130:CDS:6 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:CDS:7 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:CDS:8 | 217 | Chr2: 17567376-17567592 | Arabidopsis thaliana |
AT2G42130:CDS:10 | 53 | Chr2: 17567676-17567728 | Arabidopsis thaliana |
AT2G42130:CDS:11 | 93 | Chr2: 17567824-17567916 | Arabidopsis thaliana |
AT2G42130:CDS:1.1 | 234 | Chr2: 17566242-17566475 | Arabidopsis thaliana |
AT2G42130:CDS:4.1 | 122 | Chr2: 17566811-17566932 | Arabidopsis thaliana |
AT2G42130:CDS:6.1 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:CDS:7.1 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:CDS:9 | 276 | Chr2: 17567376-17567651 | Arabidopsis thaliana |
AT2G42130:CDS:1.2 | 234 | Chr2: 17566242-17566475 | Arabidopsis thaliana |
AT2G42130:CDS:4.2 | 122 | Chr2: 17566811-17566932 | Arabidopsis thaliana |
AT2G42130:CDS:6.2 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:CDS:7.2 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:CDS:8.1 | 217 | Chr2: 17567376-17567592 | Arabidopsis thaliana |
AT2G42130:CDS:10.1 | 53 | Chr2: 17567676-17567728 | Arabidopsis thaliana |
AT2G42130:CDS:12 | 3 | Chr2: 17567828-17567830 | Arabidopsis thaliana |
AT2G42130:CDS:5 | 71 | Chr2: 17566862-17566932 | Arabidopsis thaliana |
AT2G42130:CDS:6.3 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:CDS:7.3 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:CDS:8.2 | 217 | Chr2: 17567376-17567592 | Arabidopsis thaliana |
AT2G42130:CDS:10.2 | 53 | Chr2: 17567676-17567728 | Arabidopsis thaliana |
AT2G42130:CDS:11.1 | 93 | Chr2: 17567824-17567916 | Arabidopsis thaliana |
AT2G42130:CDS:2 | 87 | Chr2: 17566389-17566475 | Arabidopsis thaliana |
AT2G42130:CDS:3 | 185 | Chr2: 17566748-17566932 | Arabidopsis thaliana |
AT2G42130:CDS:6.4 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:CDS:7.4 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:CDS:8.3 | 217 | Chr2: 17567376-17567592 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G42120:exon:1 | 329 | Chr2: 17565909-17566237 | Arabidopsis thaliana |
AT2G42120:exon:2 | 124 | Chr2: 17565909-17566032 | Arabidopsis thaliana |
AT2G42130:exon:1 | 462 | Chr2: 17566014-17566475 | Arabidopsis thaliana |
AT2G42130:exon:13 | 403 | Chr2: 17567824-17568226 | Arabidopsis thaliana |
AT2G42130:exon:10 | 291 | Chr2: 17567376-17567666 | Arabidopsis thaliana |
AT2G42130:exon:2 | 291 | Chr2: 17566185-17566475 | Arabidopsis thaliana |
AT2G42130:exon:6 | 122 | Chr2: 17566811-17566932 | Arabidopsis thaliana |
AT2G42130:exon:14 | 234 | Chr2: 17567828-17568061 | Arabidopsis thaliana |
AT2G42130:exon:3 | 710 | Chr2: 17566223-17566932 | Arabidopsis thaliana |
AT2G42130:exon:4 | 222 | Chr2: 17566254-17566475 | Arabidopsis thaliana |
AT2G42130:exon:5 | 185 | Chr2: 17566748-17566932 | Arabidopsis thaliana |
AT2G42130:exon:7 | 84 | Chr2: 17567019-17567102 | Arabidopsis thaliana |
AT2G42130:exon:8 | 97 | Chr2: 17567190-17567286 | Arabidopsis thaliana |
AT2G42130:exon:9 | 217 | Chr2: 17567376-17567592 | Arabidopsis thaliana |
AT2G42130:exon:11 | 53 | Chr2: 17567676-17567728 | Arabidopsis thaliana |
AT2G42130:exon:12 | 321 | Chr2: 17567824-17568144 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G42120:five_prime_UTR:1 | 272 | Chr2: 17565966-17566237 | Arabidopsis thaliana |
AT2G42120:five_prime_UTR:2 | 67 | Chr2: 17565966-17566032 | Arabidopsis thaliana |
AT2G42130:five_prime_UTR:1 | 228 | Chr2: 17566014-17566241 | Arabidopsis thaliana |
AT2G42130:five_prime_UTR:2 | 57 | Chr2: 17566185-17566241 | Arabidopsis thaliana |
AT2G42130:five_prime_UTR:3 | 639 | Chr2: 17566223-17566861 | Arabidopsis thaliana |
AT2G42130:five_prime_UTR:4 | 135 | Chr2: 17566254-17566388 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G42120 | locus:2060010 | POLD2 | DNA polymerase delta small subunit | 3105 | Chr2: 17563133-17566237 | A. thaliana | DNA polymerase delta small subunit;(source:Araport11) | NULL | DNA polymerase delta small subunit | POLD2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G42120.2 | 1744 | Chr2: 17563133-17566237 |
AT2G42120.1 | 1518 | Chr2: 17563157-17566032 |
AT2G42130.4 | 1438 | Chr2: 17566014-17568226 |
AT2G42130.1 | 885 | Chr2: 17566185-17567666 |
AT2G42130.2 | 1098 | Chr2: 17566185-17568061 |
AT2G42130.5 | 1482 | Chr2: 17566223-17568144 |
AT2G42130.3 | 1179 | Chr2: 17566254-17568144 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G42130:three_prime_UTR:4 | 310 | Chr2: 17567917-17568226 | Arabidopsis thaliana |
AT2G42130:three_prime_UTR:1 | 15 | Chr2: 17567652-17567666 | Arabidopsis thaliana |
AT2G42130:three_prime_UTR:2 | 231 | Chr2: 17567831-17568061 | Arabidopsis thaliana |
AT2G42130:three_prime_UTR:3 | 228 | Chr2: 17567917-17568144 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PAP13_ARATH-6 PAP13_ARATH PAP13_ARATH-4 F4IM05_ARATH PAP13_ARATH-5 PAP13_ARATH-3 A8MRU9_ARATH PAP13_ARATH-2 | similarity | Belongs to the PAP/fibrillin family. |
Function
Gene Ontology
cellular component | |
---|---|
plastoglobule | ECO |
chloroplast thylakoid | ECO |
cytosol | ECO |
chloroplast stroma | ECO |
thylakoid | ECO |
chloroplast | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...