External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G41590:CDS:1 | 1104 | Chr2: 17343600-17344703 | Arabidopsis thaliana |
AT2G41600:CDS:8 | 43 | Chr2: 17344747-17344789 | Arabidopsis thaliana |
AT2G41600:CDS:6 | 168 | Chr2: 17345601-17345768 | Arabidopsis thaliana |
AT2G41600:CDS:3 | 338 | Chr2: 17345993-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:2 | 114 | Chr2: 17346588-17346701 | Arabidopsis thaliana |
AT2G41600:CDS:4 | 342 | Chr2: 17345989-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:2.1 | 114 | Chr2: 17346588-17346701 | Arabidopsis thaliana |
AT2G41600:CDS:7 | 172 | Chr2: 17345597-17345768 | Arabidopsis thaliana |
AT2G41600:CDS:3.1 | 338 | Chr2: 17345993-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:2.2 | 114 | Chr2: 17346588-17346701 | Arabidopsis thaliana |
AT2G41600:CDS:7.1 | 172 | Chr2: 17345597-17345768 | Arabidopsis thaliana |
AT2G41600:CDS:3.2 | 338 | Chr2: 17345993-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:1 | 183 | Chr2: 17346588-17346770 | Arabidopsis thaliana |
AT2G41600:CDS:4.1 | 342 | Chr2: 17345989-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:1.1 | 183 | Chr2: 17346588-17346770 | Arabidopsis thaliana |
AT2G41600:CDS:5 | 43 | Chr2: 17345718-17345760 | Arabidopsis thaliana |
AT2G41600:CDS:3.3 | 338 | Chr2: 17345993-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:2.3 | 114 | Chr2: 17346588-17346701 | Arabidopsis thaliana |
AT2G41600:CDS:4.2 | 342 | Chr2: 17345989-17346330 | Arabidopsis thaliana |
AT2G41600:CDS:2.4 | 114 | Chr2: 17346588-17346701 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G41590:exon:1 | 1646 | Chr2: 17343360-17345005 | Arabidopsis thaliana |
AT2G41600:exon:13 | 153 | Chr2: 17344637-17344789 | Arabidopsis thaliana |
AT2G41600:exon:6 | 168 | Chr2: 17345601-17345768 | Arabidopsis thaliana |
AT2G41600:exon:11 | 1104 | Chr2: 17345227-17346330 | Arabidopsis thaliana |
AT2G41600:exon:12 | 542 | Chr2: 17345227-17345768 | Arabidopsis thaliana |
AT2G41600:exon:2 | 164 | Chr2: 17346588-17346751 | Arabidopsis thaliana |
AT2G41600:exon:10 | 516 | Chr2: 17345253-17345768 | Arabidopsis thaliana |
AT2G41600:exon:9 | 1078 | Chr2: 17345253-17346330 | Arabidopsis thaliana |
AT2G41600:exon:1 | 353 | Chr2: 17346588-17346940 | Arabidopsis thaliana |
AT2G41600:exon:8 | 384 | Chr2: 17345377-17345760 | Arabidopsis thaliana |
AT2G41600:exon:4 | 338 | Chr2: 17345993-17346330 | Arabidopsis thaliana |
AT2G41600:exon:7 | 381 | Chr2: 17345388-17345768 | Arabidopsis thaliana |
AT2G41600:exon:5 | 343 | Chr2: 17345988-17346330 | Arabidopsis thaliana |
AT2G41600:exon:3 | 150 | Chr2: 17346588-17346737 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G41600:five_prime_UTR:2 | 50 | Chr2: 17346702-17346751 | Arabidopsis thaliana |
AT2G41600:five_prime_UTR:1 | 170 | Chr2: 17346771-17346940 | Arabidopsis thaliana |
AT2G41600:five_prime_UTR:3 | 36 | Chr2: 17346702-17346737 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G41590 | locus:2062652 | AT2G41590 | 1646 | Chr2: 17343360-17345005 | A. thaliana | Ta11-like non-LTR retrotransposon;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G41590.1 | 1646 | Chr2: 17343360-17345005 |
AT2G41600.5 | 809 | Chr2: 17344637-17346737 |
AT2G41600.1 | 1268 | Chr2: 17345227-17346751 |
AT2G41600.3 | 1044 | Chr2: 17345227-17346751 |
AT2G41600.7 | 1207 | Chr2: 17345253-17346940 |
AT2G41600.6 | 1431 | Chr2: 17345253-17346940 |
AT2G41600.2 | 872 | Chr2: 17345377-17346737 |
AT2G41600.4 | 874 | Chr2: 17345388-17346737 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G41590:three_prime_UTR:1 | 302 | Chr2: 17344704-17345005 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:8 | 110 | Chr2: 17344637-17344746 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:6 | 762 | Chr2: 17345227-17345988 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:7 | 370 | Chr2: 17345227-17345596 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:5 | 344 | Chr2: 17345253-17345596 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:4 | 736 | Chr2: 17345253-17345988 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:3 | 341 | Chr2: 17345377-17345717 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:2 | 381 | Chr2: 17345388-17345768 | Arabidopsis thaliana |
AT2G41600:three_prime_UTR:1 | 1 | Chr2: 17345988-17345988 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
mitochondrial matrix | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...