External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- PIR
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 19, Exons: 13, Five Prime UTRs: 3, mRNAs: 3, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G40570:CDS:3 | 84 | Chr2: 16941554-16941637 | Arabidopsis thaliana |
AT2G40570:CDS:4 | 676 | Chr2: 16941718-16942393 | Arabidopsis thaliana |
AT2G40570:CDS:5 | 101 | Chr2: 16942541-16942641 | Arabidopsis thaliana |
AT2G40570:CDS:6 | 109 | Chr2: 16942738-16942846 | Arabidopsis thaliana |
AT2G40570:CDS:8 | 60 | Chr2: 16942923-16942982 | Arabidopsis thaliana |
AT2G40570:CDS:10 | 170 | Chr2: 16943119-16943288 | Arabidopsis thaliana |
AT2G40570:CDS:1 | 304 | Chr2: 16941066-16941369 | Arabidopsis thaliana |
AT2G40570:CDS:2 | 146 | Chr2: 16941492-16941637 | Arabidopsis thaliana |
AT2G40570:CDS:4.1 | 676 | Chr2: 16941718-16942393 | Arabidopsis thaliana |
AT2G40570:CDS:5.1 | 101 | Chr2: 16942541-16942641 | Arabidopsis thaliana |
AT2G40570:CDS:6.1 | 109 | Chr2: 16942738-16942846 | Arabidopsis thaliana |
AT2G40570:CDS:8.1 | 60 | Chr2: 16942923-16942982 | Arabidopsis thaliana |
AT2G40570:CDS:10.1 | 170 | Chr2: 16943119-16943288 | Arabidopsis thaliana |
AT2G40570:CDS:1.1 | 304 | Chr2: 16941066-16941369 | Arabidopsis thaliana |
AT2G40570:CDS:2.1 | 146 | Chr2: 16941492-16941637 | Arabidopsis thaliana |
AT2G40570:CDS:4.2 | 676 | Chr2: 16941718-16942393 | Arabidopsis thaliana |
AT2G40570:CDS:5.2 | 101 | Chr2: 16942541-16942641 | Arabidopsis thaliana |
AT2G40570:CDS:7 | 113 | Chr2: 16942738-16942850 | Arabidopsis thaliana |
AT2G40570:CDS:9 | 49 | Chr2: 16942929-16942977 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G40570:exon:1 | 816 | Chr2: 16940822-16941637 | Arabidopsis thaliana |
AT2G40570:exon:12 | 385 | Chr2: 16943119-16943503 | Arabidopsis thaliana |
AT2G40570:exon:2 | 545 | Chr2: 16940825-16941369 | Arabidopsis thaliana |
AT2G40570:exon:7 | 109 | Chr2: 16942738-16942846 | Arabidopsis thaliana |
AT2G40570:exon:9 | 60 | Chr2: 16942923-16942982 | Arabidopsis thaliana |
AT2G40570:exon:13 | 397 | Chr2: 16943119-16943515 | Arabidopsis thaliana |
AT2G40570:exon:3 | 535 | Chr2: 16940835-16941369 | Arabidopsis thaliana |
AT2G40570:exon:4 | 146 | Chr2: 16941492-16941637 | Arabidopsis thaliana |
AT2G40570:exon:5 | 676 | Chr2: 16941718-16942393 | Arabidopsis thaliana |
AT2G40570:exon:6 | 101 | Chr2: 16942541-16942641 | Arabidopsis thaliana |
AT2G40570:exon:8 | 113 | Chr2: 16942738-16942850 | Arabidopsis thaliana |
AT2G40570:exon:10 | 54 | Chr2: 16942929-16942982 | Arabidopsis thaliana |
AT2G40570:exon:11 | 374 | Chr2: 16943119-16943492 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G40570:five_prime_UTR:1 | 732 | Chr2: 16940822-16941553 | Arabidopsis thaliana |
AT2G40570:five_prime_UTR:2 | 241 | Chr2: 16940825-16941065 | Arabidopsis thaliana |
AT2G40570:five_prime_UTR:3 | 231 | Chr2: 16940835-16941065 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G40570.3 | 2147 | Chr2: 16940822-16943503 |
AT2G40570.1 | 2034 | Chr2: 16940825-16943515 |
AT2G40570.2 | 1999 | Chr2: 16940835-16943492 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G40570:three_prime_UTR:3 | 215 | Chr2: 16943289-16943503 | Arabidopsis thaliana |
AT2G40570:three_prime_UTR:4 | 227 | Chr2: 16943289-16943515 | Arabidopsis thaliana |
AT2G40570:three_prime_UTR:1 | 5 | Chr2: 16942978-16942982 | Arabidopsis thaliana |
AT2G40570:three_prime_UTR:2 | 374 | Chr2: 16943119-16943492 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE76270 | 31 | Chr2: 16940792-16940822 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE76270:transposon_fragment:1 | 31 | Chr2: 16940792-16940822 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
tRNA adenosine(64)-2'-O-ribosylphosphate transferase activity | ECO |
biological process | |
charged-tRNA amino acid modification | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...