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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 47, Exons: 19, Five Prime UTRs: 3, Gene: 1, mRNAs: 5, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39830:CDS:15 | 332 | Chr2: 16619950-16620281 | Arabidopsis thaliana |
AT2G39830:CDS:12 | 59 | Chr2: 16620565-16620623 | Arabidopsis thaliana |
AT2G39830:CDS:11 | 116 | Chr2: 16620704-16620819 | Arabidopsis thaliana |
AT2G39830:CDS:10 | 63 | Chr2: 16620909-16620971 | Arabidopsis thaliana |
AT2G39830:CDS:9 | 213 | Chr2: 16621066-16621278 | Arabidopsis thaliana |
AT2G39830:CDS:8 | 120 | Chr2: 16621380-16621499 | Arabidopsis thaliana |
AT2G39830:CDS:7 | 84 | Chr2: 16621584-16621667 | Arabidopsis thaliana |
AT2G39830:CDS:6 | 121 | Chr2: 16621783-16621903 | Arabidopsis thaliana |
AT2G39830:CDS:5 | 118 | Chr2: 16622193-16622310 | Arabidopsis thaliana |
AT2G39830:CDS:4 | 88 | Chr2: 16622430-16622517 | Arabidopsis thaliana |
AT2G39830:CDS:2 | 155 | Chr2: 16623334-16623488 | Arabidopsis thaliana |
AT2G39830:CDS:1 | 91 | Chr2: 16623568-16623658 | Arabidopsis thaliana |
AT2G39830:CDS:15.1 | 332 | Chr2: 16619950-16620281 | Arabidopsis thaliana |
AT2G39830:CDS:13 | 68 | Chr2: 16620556-16620623 | Arabidopsis thaliana |
AT2G39830:CDS:11.1 | 116 | Chr2: 16620704-16620819 | Arabidopsis thaliana |
AT2G39830:CDS:10.1 | 63 | Chr2: 16620909-16620971 | Arabidopsis thaliana |
AT2G39830:CDS:9.1 | 213 | Chr2: 16621066-16621278 | Arabidopsis thaliana |
AT2G39830:CDS:8.1 | 120 | Chr2: 16621380-16621499 | Arabidopsis thaliana |
AT2G39830:CDS:7.1 | 84 | Chr2: 16621584-16621667 | Arabidopsis thaliana |
AT2G39830:CDS:6.1 | 121 | Chr2: 16621783-16621903 | Arabidopsis thaliana |
AT2G39830:CDS:5.1 | 118 | Chr2: 16622193-16622310 | Arabidopsis thaliana |
AT2G39830:CDS:4.1 | 88 | Chr2: 16622430-16622517 | Arabidopsis thaliana |
AT2G39830:CDS:3 | 182 | Chr2: 16623307-16623488 | Arabidopsis thaliana |
AT2G39830:CDS:1.1 | 91 | Chr2: 16623568-16623658 | Arabidopsis thaliana |
AT2G39830:CDS:15.2 | 332 | Chr2: 16619950-16620281 | Arabidopsis thaliana |
AT2G39830:CDS:12.1 | 59 | Chr2: 16620565-16620623 | Arabidopsis thaliana |
AT2G39830:CDS:11.2 | 116 | Chr2: 16620704-16620819 | Arabidopsis thaliana |
AT2G39830:CDS:10.2 | 63 | Chr2: 16620909-16620971 | Arabidopsis thaliana |
AT2G39830:CDS:9.2 | 213 | Chr2: 16621066-16621278 | Arabidopsis thaliana |
AT2G39830:CDS:8.2 | 120 | Chr2: 16621380-16621499 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39820:exon:6 | 416 | Chr2: 16619335-16619750 | Arabidopsis thaliana |
AT2G39830:exon:4 | 155 | Chr2: 16623334-16623488 | Arabidopsis thaliana |
AT2G39830:exon:18 | 539 | Chr2: 16619743-16620281 | Arabidopsis thaliana |
AT2G39830:exon:15 | 68 | Chr2: 16620556-16620623 | Arabidopsis thaliana |
AT2G39830:exon:1 | 583 | Chr2: 16623568-16624150 | Arabidopsis thaliana |
AT2G39830:exon:17 | 533 | Chr2: 16619749-16620281 | Arabidopsis thaliana |
AT2G39830:exon:14 | 59 | Chr2: 16620565-16620623 | Arabidopsis thaliana |
AT2G39830:exon:2 | 470 | Chr2: 16623568-16624037 | Arabidopsis thaliana |
AT2G39830:exon:16 | 863 | Chr2: 16619761-16620623 | Arabidopsis thaliana |
AT2G39830:exon:13 | 116 | Chr2: 16620704-16620819 | Arabidopsis thaliana |
AT2G39830:exon:12 | 63 | Chr2: 16620909-16620971 | Arabidopsis thaliana |
AT2G39830:exon:11 | 213 | Chr2: 16621066-16621278 | Arabidopsis thaliana |
AT2G39830:exon:10 | 120 | Chr2: 16621380-16621499 | Arabidopsis thaliana |
AT2G39830:exon:9 | 84 | Chr2: 16621584-16621667 | Arabidopsis thaliana |
AT2G39830:exon:8 | 121 | Chr2: 16621783-16621903 | Arabidopsis thaliana |
AT2G39830:exon:7 | 118 | Chr2: 16622193-16622310 | Arabidopsis thaliana |
AT2G39830:exon:6 | 88 | Chr2: 16622430-16622517 | Arabidopsis thaliana |
AT2G39830:exon:5 | 182 | Chr2: 16623307-16623488 | Arabidopsis thaliana |
AT2G39830:exon:3 | 292 | Chr2: 16623568-16623859 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39830:five_prime_UTR:1 | 492 | Chr2: 16623659-16624150 | Arabidopsis thaliana |
AT2G39830:five_prime_UTR:2 | 379 | Chr2: 16623659-16624037 | Arabidopsis thaliana |
AT2G39830:five_prime_UTR:3 | 201 | Chr2: 16623659-16623859 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G39820 | locus:2063927 | eIF6B | eukaryotic initiation factor 6B | 1525 | Chr2: 16618226-16619750 | A. thaliana | Translation initiation factor IF6;(source:Araport11) | NULL | Translation initiation factor IF6 | eIF6B |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G39820.1 | 996 | Chr2: 16618226-16619750 |
AT2G39830.3 | 2259 | Chr2: 16619743-16624150 |
AT2G39830.2 | 2295 | Chr2: 16619743-16624150 |
AT2G39830.1 | 2167 | Chr2: 16619749-16624037 |
AT2G39830.4 | 2260 | Chr2: 16619761-16623859 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39820:three_prime_UTR:1 | 158 | Chr2: 16619593-16619750 | Arabidopsis thaliana |
AT2G39830:three_prime_UTR:3 | 207 | Chr2: 16619743-16619949 | Arabidopsis thaliana |
AT2G39830:three_prime_UTR:2 | 201 | Chr2: 16619749-16619949 | Arabidopsis thaliana |
AT2G39830:three_prime_UTR:1 | 736 | Chr2: 16619761-16620496 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE74720 | 187 | Chr2: 16623793-16623979 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE74720:transposon_fragment:1 | 187 | Chr2: 16623793-16623979 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
DAR2_ARATH | developmental stage | Highly expressed during early stages leaf development, and expression decreases at the later stages of leaf development. |
DAR2_ARATH | function | Acts redundantly with DA1 and DAR1 to regulate endoreduplication during leaf development. Together with DA1 and DAR1, modulates the protein stability of the transcription factors TCP14 and TCP15, which repress endoreduplication by directly regulating the expression of cell-cycle genes (PubMed:25757472). Involved in root phloem development. Is an essential component of early phloem development, long-distance delivery of phloem content, and proper maintenance of root system architecture (PubMed:21749503). Involved in the control of root meristem size. Functions genetically downstream of cytokinin and IAA3 to maintain normal auxin distribution by influencing polar auxin transport. Acts through the PLETHORA pathway, upstream of PLT1 and PLT2 to influence root stem cell niche activity and thus control root meristem size (PubMed:23296689). |
DAR2_ARATH | tissue specificity | Expressed in the vasculature of leaves, inflorescence stems, flowers, hypocotyls, and primary and lateral roots. In roots, expressed in phloem companion cells. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ubiquitin binding | ECO |
metal ion binding | ECO |
peptidase activity | ECO |
biological process | |
root development | ECO |
regulation of DNA endoreduplication | ECO |
phloem development | ECO |
Interactions
Interaction Network
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Expression
Co-expression
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Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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