External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39580:CDS:1 | 78 | Chr2: 16510540-16510617 | Arabidopsis thaliana |
AT2G39580:CDS:2 | 82 | Chr2: 16510958-16511039 | Arabidopsis thaliana |
AT2G39580:CDS:3 | 756 | Chr2: 16511127-16511882 | Arabidopsis thaliana |
AT2G39580:CDS:4 | 122 | Chr2: 16512008-16512129 | Arabidopsis thaliana |
AT2G39580:CDS:5 | 108 | Chr2: 16512257-16512364 | Arabidopsis thaliana |
AT2G39580:CDS:7 | 877 | Chr2: 16512460-16513336 | Arabidopsis thaliana |
AT2G39580:CDS:8 | 465 | Chr2: 16513612-16514076 | Arabidopsis thaliana |
AT2G39580:CDS:9 | 308 | Chr2: 16514153-16514460 | Arabidopsis thaliana |
AT2G39580:CDS:10 | 99 | Chr2: 16514597-16514695 | Arabidopsis thaliana |
AT2G39580:CDS:12 | 123 | Chr2: 16514775-16514897 | Arabidopsis thaliana |
AT2G39580:CDS:13 | 1761 | Chr2: 16515188-16516948 | Arabidopsis thaliana |
AT2G39580:CDS:1.1 | 78 | Chr2: 16510540-16510617 | Arabidopsis thaliana |
AT2G39580:CDS:2.1 | 82 | Chr2: 16510958-16511039 | Arabidopsis thaliana |
AT2G39580:CDS:3.1 | 756 | Chr2: 16511127-16511882 | Arabidopsis thaliana |
AT2G39580:CDS:4.1 | 122 | Chr2: 16512008-16512129 | Arabidopsis thaliana |
AT2G39580:CDS:6 | 147 | Chr2: 16512257-16512403 | Arabidopsis thaliana |
AT2G39580:CDS:7.1 | 877 | Chr2: 16512460-16513336 | Arabidopsis thaliana |
AT2G39580:CDS:8.1 | 465 | Chr2: 16513612-16514076 | Arabidopsis thaliana |
AT2G39580:CDS:9.1 | 308 | Chr2: 16514153-16514460 | Arabidopsis thaliana |
AT2G39580:CDS:11 | 138 | Chr2: 16514760-16514897 | Arabidopsis thaliana |
AT2G39580:CDS:13.1 | 1761 | Chr2: 16515188-16516948 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39580:exon:1 | 345 | Chr2: 16510273-16510617 | Arabidopsis thaliana |
AT2G39580:exon:6 | 108 | Chr2: 16512257-16512364 | Arabidopsis thaliana |
AT2G39580:exon:11 | 99 | Chr2: 16514597-16514695 | Arabidopsis thaliana |
AT2G39580:exon:13 | 123 | Chr2: 16514775-16514897 | Arabidopsis thaliana |
AT2G39580:exon:15 | 2013 | Chr2: 16515188-16517200 | Arabidopsis thaliana |
AT2G39580:exon:2 | 193 | Chr2: 16510425-16510617 | Arabidopsis thaliana |
AT2G39580:exon:3 | 82 | Chr2: 16510958-16511039 | Arabidopsis thaliana |
AT2G39580:exon:4 | 756 | Chr2: 16511127-16511882 | Arabidopsis thaliana |
AT2G39580:exon:5 | 122 | Chr2: 16512008-16512129 | Arabidopsis thaliana |
AT2G39580:exon:7 | 147 | Chr2: 16512257-16512403 | Arabidopsis thaliana |
AT2G39580:exon:8 | 877 | Chr2: 16512460-16513336 | Arabidopsis thaliana |
AT2G39580:exon:9 | 465 | Chr2: 16513612-16514076 | Arabidopsis thaliana |
AT2G39580:exon:10 | 308 | Chr2: 16514153-16514460 | Arabidopsis thaliana |
AT2G39580:exon:12 | 138 | Chr2: 16514760-16514897 | Arabidopsis thaliana |
AT2G39580:exon:14 | 1886 | Chr2: 16515188-16517073 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39580:five_prime_UTR:1 | 267 | Chr2: 16510273-16510539 | Arabidopsis thaliana |
AT2G39580:five_prime_UTR:2 | 115 | Chr2: 16510425-16510539 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G39580.2 | 5298 | Chr2: 16510273-16517200 |
AT2G39580.1 | 4974 | Chr2: 16510425-16517073 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39580:three_prime_UTR:2 | 252 | Chr2: 16516949-16517200 | Arabidopsis thaliana |
AT2G39580:three_prime_UTR:1 | 125 | Chr2: 16516949-16517073 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
exosome (RNase complex) | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...