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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38920:CDS:9 | 106 | Chr2: 16248420-16248525 | Arabidopsis thaliana |
AT2G38920:CDS:8 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:CDS:7 | 138 | Chr2: 16248986-16249123 | Arabidopsis thaliana |
AT2G38920:CDS:4 | 252 | Chr2: 16249219-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:CDS:1 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:CDS:5 | 288 | Chr2: 16249183-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2.1 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:CDS:1.1 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:CDS:10 | 103 | Chr2: 16248420-16248522 | Arabidopsis thaliana |
AT2G38920:CDS:8.1 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:CDS:7.1 | 138 | Chr2: 16248986-16249123 | Arabidopsis thaliana |
AT2G38920:CDS:4.1 | 252 | Chr2: 16249219-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2.2 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:CDS:1.2 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:CDS:9.1 | 106 | Chr2: 16248420-16248525 | Arabidopsis thaliana |
AT2G38920:CDS:8.2 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:CDS:7.2 | 138 | Chr2: 16248986-16249123 | Arabidopsis thaliana |
AT2G38920:CDS:4.2 | 252 | Chr2: 16249219-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2.3 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:CDS:1.3 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:CDS:6 | 28 | Chr2: 16249096-16249123 | Arabidopsis thaliana |
AT2G38920:CDS:3 | 224 | Chr2: 16249247-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2.4 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:CDS:1.4 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:CDS:9.2 | 106 | Chr2: 16248420-16248525 | Arabidopsis thaliana |
AT2G38920:CDS:8.3 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:CDS:7.3 | 138 | Chr2: 16248986-16249123 | Arabidopsis thaliana |
AT2G38920:CDS:4.3 | 252 | Chr2: 16249219-16249470 | Arabidopsis thaliana |
AT2G38920:CDS:2.5 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38920:exon:4 | 211 | Chr2: 16250378-16250588 | Arabidopsis thaliana |
AT2G38920:exon:9 | 485 | Chr2: 16248986-16249470 | Arabidopsis thaliana |
AT2G38920:exon:13 | 377 | Chr2: 16248146-16248522 | Arabidopsis thaliana |
AT2G38920:exon:2 | 193 | Chr2: 16250810-16251002 | Arabidopsis thaliana |
AT2G38920:exon:7 | 224 | Chr2: 16249247-16249470 | Arabidopsis thaliana |
AT2G38920:exon:3 | 241 | Chr2: 16250378-16250618 | Arabidopsis thaliana |
AT2G38920:exon:12 | 380 | Chr2: 16248146-16248525 | Arabidopsis thaliana |
AT2G38920:exon:11 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:exon:10 | 138 | Chr2: 16248986-16249123 | Arabidopsis thaliana |
AT2G38920:exon:8 | 252 | Chr2: 16249219-16249470 | Arabidopsis thaliana |
AT2G38920:exon:6 | 245 | Chr2: 16249566-16249810 | Arabidopsis thaliana |
AT2G38920:exon:5 | 208 | Chr2: 16250378-16250585 | Arabidopsis thaliana |
AT2G38920:exon:1 | 208 | Chr2: 16250810-16251017 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38920:five_prime_UTR:4 | 3 | Chr2: 16250586-16250588 | Arabidopsis thaliana |
AT2G38920:five_prime_UTR:2 | 193 | Chr2: 16250810-16251002 | Arabidopsis thaliana |
AT2G38920:five_prime_UTR:3 | 33 | Chr2: 16250586-16250618 | Arabidopsis thaliana |
AT2G38920:five_prime_UTR:1 | 208 | Chr2: 16250810-16251017 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G38920.6 | 1478 | Chr2: 16248146-16251002 |
AT2G38920.4 | 1603 | Chr2: 16248146-16251002 |
AT2G38920.2 | 1505 | Chr2: 16248146-16251002 |
AT2G38920.1 | 1523 | Chr2: 16248146-16251017 |
AT2G38920.3 | 1495 | Chr2: 16248146-16251017 |
AT2G38920.5 | 1490 | Chr2: 16248146-16251017 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38920:three_prime_UTR:1 | 197 | Chr2: 16248986-16249182 | Arabidopsis thaliana |
AT2G38920:three_prime_UTR:4 | 380 | Chr2: 16248146-16248525 | Arabidopsis thaliana |
AT2G38920:three_prime_UTR:3 | 59 | Chr2: 16248827-16248885 | Arabidopsis thaliana |
AT2G38920:three_prime_UTR:2 | 110 | Chr2: 16248986-16249095 | Arabidopsis thaliana |
AT2G38920:three_prime_UTR:5 | 274 | Chr2: 16248146-16248419 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
B3H525_ARATH B3H7B1_ARATH A0A1P8B1L9_ARATH BAH1L_ARATH | pathway | Protein modification; protein ubiquitination. |
B3H7B1_ARATH BAH1L_ARATH | similarity | Belongs to the RING-type zinc finger family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
acyltransferase activity | ECO |
metal ion binding | ECO |
catalytic activity, acting on a protein | ECO |
biological process | |
protein ubiquitination | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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