External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Transcript | Exons | Introns | ||
---|---|---|---|---|
AT2G38790.1
AT2G38790.1
1076 |
|
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38790:CDS:1 | 615 | Chr2: 16214546-16215160 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38780:exon:22 | 1428 | Chr2: 16213886-16215313 | Arabidopsis thaliana |
AT2G38780:exon:23 | 1475 | Chr2: 16213886-16215360 | Arabidopsis thaliana |
AT2G38780:exon:26 | 1636 | Chr2: 16213886-16215521 | Arabidopsis thaliana |
AT2G38780:exon:25 | 1554 | Chr2: 16213886-16215439 | Arabidopsis thaliana |
AT2G38780:exon:24 | 1479 | Chr2: 16213886-16215364 | Arabidopsis thaliana |
AT2G38780:exon:14 | 2109 | Chr2: 16213256-16215364 | Arabidopsis thaliana |
AT2G38780:exon:20 | 1350 | Chr2: 16213886-16215235 | Arabidopsis thaliana |
AT2G38780:exon:21 | 1373 | Chr2: 16213886-16215258 | Arabidopsis thaliana |
AT2G38790:exon:1 | 1076 | Chr2: 16214189-16215264 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38790:five_prime_UTR:1 | 104 | Chr2: 16215161-16215264 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G38780 | locus:2040369 | AT2G38780 | 4706 | Chr2: 16210816-16215521 | A. thaliana | cytochrome C oxidase subunit;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G38780.2 | 2827 | Chr2: 16210816-16215313 |
AT2G38780.4 | 2687 | Chr2: 16210825-16215360 |
AT2G38780.3 | 2853 | Chr2: 16210825-16215360 |
AT2G38780.7 | 2850 | Chr2: 16210831-16215521 |
AT2G38780.5 | 3109 | Chr2: 16210831-16215521 |
AT2G38780.6 | 2911 | Chr2: 16210831-16215521 |
AT2G38780.8 | 3030 | Chr2: 16210836-16215439 |
AT2G38780.9 | 2941 | Chr2: 16210836-16215439 |
AT2G38780.10 | 3307 | Chr2: 16210839-16215364 |
AT2G38780.11 | 3154 | Chr2: 16210839-16215364 |
AT2G38780.1 | 2530 | Chr2: 16210857-16215235 |
AT2G38780.12 | 2820 | Chr2: 16210857-16215258 |
AT2G38780.13 | 2561 | Chr2: 16210857-16215258 |
AT2G38790.1 | 1076 | Chr2: 16214189-16215264 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38780:three_prime_UTR:11 | 1428 | Chr2: 16213886-16215313 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:17 | 1250 | Chr2: 16214111-16215360 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:12 | 1475 | Chr2: 16213886-16215360 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:15 | 1636 | Chr2: 16213886-16215521 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:18 | 1411 | Chr2: 16214111-16215521 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:14 | 1554 | Chr2: 16213886-16215439 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:13 | 1479 | Chr2: 16213886-16215364 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:5 | 2082 | Chr2: 16213283-16215364 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:16 | 1125 | Chr2: 16214111-16215235 | Arabidopsis thaliana |
AT2G38780:three_prime_UTR:10 | 1373 | Chr2: 16213886-16215258 | Arabidopsis thaliana |
AT2G38790:three_prime_UTR:1 | 357 | Chr2: 16214189-16214545 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...