External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38570:CDS:8 | 147 | Chr2: 16136854-16137000 | Arabidopsis thaliana |
AT2G38570:CDS:7 | 102 | Chr2: 16137084-16137185 | Arabidopsis thaliana |
AT2G38570:CDS:5 | 90 | Chr2: 16137309-16137398 | Arabidopsis thaliana |
AT2G38570:CDS:4 | 45 | Chr2: 16137486-16137530 | Arabidopsis thaliana |
AT2G38570:CDS:3 | 75 | Chr2: 16137614-16137688 | Arabidopsis thaliana |
AT2G38570:CDS:2 | 81 | Chr2: 16137780-16137860 | Arabidopsis thaliana |
AT2G38570:CDS:1 | 447 | Chr2: 16137971-16138417 | Arabidopsis thaliana |
AT2G38570:CDS:6 | 141 | Chr2: 16137258-16137398 | Arabidopsis thaliana |
AT2G38570:CDS:4.1 | 45 | Chr2: 16137486-16137530 | Arabidopsis thaliana |
AT2G38570:CDS:3.1 | 75 | Chr2: 16137614-16137688 | Arabidopsis thaliana |
AT2G38570:CDS:2.1 | 81 | Chr2: 16137780-16137860 | Arabidopsis thaliana |
AT2G38570:CDS:1.1 | 447 | Chr2: 16137971-16138417 | Arabidopsis thaliana |
AT2G38580:CDS:1 | 201 | Chr2: 16138838-16139038 | Arabidopsis thaliana |
AT2G38580:CDS:1.1 | 201 | Chr2: 16138838-16139038 | Arabidopsis thaliana |
AT2G38580:CDS:1.2 | 201 | Chr2: 16138838-16139038 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38560:exon:2 | 1348 | Chr2: 16135348-16136695 | Arabidopsis thaliana |
AT2G38570:exon:9 | 312 | Chr2: 16136689-16137000 | Arabidopsis thaliana |
AT2G38570:exon:8 | 102 | Chr2: 16137084-16137185 | Arabidopsis thaliana |
AT2G38570:exon:6 | 90 | Chr2: 16137309-16137398 | Arabidopsis thaliana |
AT2G38570:exon:7 | 168 | Chr2: 16137231-16137398 | Arabidopsis thaliana |
AT2G38570:exon:5 | 45 | Chr2: 16137486-16137530 | Arabidopsis thaliana |
AT2G38570:exon:4 | 75 | Chr2: 16137614-16137688 | Arabidopsis thaliana |
AT2G38570:exon:3 | 81 | Chr2: 16137780-16137860 | Arabidopsis thaliana |
AT2G38570:exon:2 | 556 | Chr2: 16137971-16138526 | Arabidopsis thaliana |
AT2G38570:exon:1 | 37 | Chr2: 16138850-16138886 | Arabidopsis thaliana |
AT2G38580:exon:1 | 106 | Chr2: 16138570-16138675 | Arabidopsis thaliana |
AT2G38580:exon:2 | 203 | Chr2: 16138836-16139038 | Arabidopsis thaliana |
AT2G38580:exon:3 | 201 | Chr2: 16138838-16139038 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38570:five_prime_UTR:2 | 109 | Chr2: 16138418-16138526 | Arabidopsis thaliana |
AT2G38570:five_prime_UTR:1 | 37 | Chr2: 16138850-16138886 | Arabidopsis thaliana |
AT2G38580:five_prime_UTR:1 | 106 | Chr2: 16138570-16138675 | Arabidopsis thaliana |
AT2G38580:five_prime_UTR:2 | 2 | Chr2: 16138836-16138837 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G38560 | locus:2064195 | TFIIS | transcript elongation factor IIS | 2153 | Chr2: 16134543-16136695 | A. thaliana | transcript elongation factor IIS;(source:Araport11) | Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy; essential for heat stress adaptation. | transcript elongation factor IIS | RDO2, TFIIS |
AT2G38580 | locus:2064168 | AT2G38580 | 4088 | Chr2: 16138570-16142657 | A. thaliana | Mitochondrial ATP synthase D chain-related protein;(source:Araport11) | NULL | Mitochondrial ATP synthase D chain-related protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G38560.1 | 1772 | Chr2: 16134543-16136695 |
AT2G38570.1 | 1298 | Chr2: 16136689-16138886 |
AT2G38570.2 | 962 | Chr2: 16137231-16138886 |
AT2G38580.1 | 1843 | Chr2: 16138570-16142657 |
AT2G38580.3 | 1622 | Chr2: 16138838-16142607 |
AT2G38580.2 | 1777 | Chr2: 16138838-16142627 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G38560:three_prime_UTR:1 | 376 | Chr2: 16136320-16136695 | Arabidopsis thaliana |
AT2G38570:three_prime_UTR:2 | 165 | Chr2: 16136689-16136853 | Arabidopsis thaliana |
AT2G38570:three_prime_UTR:1 | 27 | Chr2: 16137231-16137257 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...