help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403

Gene : AT2G31110 A. thaliana
DB identifier  ? AT2G31110 Secondary Identifier  ? locus:2055878
Brief Description  trichome birefringence-like protein (DUF828)
TAIR Computational Description  trichome birefringence-like protein (DUF828);(source:Araport11)
TAIR Curator Summary  Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
TAIR Short Description  Plant protein of unknown function (DUF828)
TAIR Aliases  TBL40
Paste the following link
Lists
This Gene isn't in any lists. Upload a list.

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3928  
Location: Chr2:13258329-13262256 reverse strand

Gene models - AT2G31110 AT2G31110

? Gene models

Transcripts: 3  Exons: 14  Introns: 11 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 14, Exons: 8, Five Prime UTRs: 3, mRNAs: 3, Three Prime UTRs: 2
Show all in a table »

11 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Show proteins
Curated comments from UniProt

Type Comment Proteins
TBL40_ARATH TBL40_ARATH-2 function May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins (By similarity). May be involved in the specific O-acetylation of cell wall polymers (By similarity).
A0A1P8B0F5_ARATH TBL40_ARATH TBL40_ARATH-2 similarity Belongs to the PC-esterase family. TBL subfamily.

3 Proteins

Function

Gene Ontology

cellular component
membrane  ? ECO  
molecular function
O-acetyltransferase activity  ? ECO  
biological process
No terms in this category.

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets






BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom