External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 17, Exons: 10, Five Prime UTRs: 3, mRNAs: 3, Three Prime UTRs: 3, Transposable Elements: 3, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G29790:CDS:13 | 170 | Chr2: 12720851-12721020 | Arabidopsis thaliana |
AT2G29790:CDS:10 | 36 | Chr2: 12721332-12721367 | Arabidopsis thaliana |
AT2G29790:CDS:8 | 39 | Chr2: 12721624-12721662 | Arabidopsis thaliana |
AT2G29790:CDS:6 | 36 | Chr2: 12721923-12721958 | Arabidopsis thaliana |
AT2G29790:CDS:4 | 36 | Chr2: 12722208-12722243 | Arabidopsis thaliana |
AT2G29790:CDS:1 | 64 | Chr2: 12722369-12722432 | Arabidopsis thaliana |
AT2G29790:CDS:12 | 36 | Chr2: 12720985-12721020 | Arabidopsis thaliana |
AT2G29790:CDS:9 | 36 | Chr2: 12721332-12721367 | Arabidopsis thaliana |
AT2G29790:CDS:7 | 39 | Chr2: 12721624-12721662 | Arabidopsis thaliana |
AT2G29790:CDS:5 | 36 | Chr2: 12721923-12721958 | Arabidopsis thaliana |
AT2G29790:CDS:3 | 36 | Chr2: 12722208-12722243 | Arabidopsis thaliana |
AT2G29790:CDS:2 | 6 | Chr2: 12722369-12722374 | Arabidopsis thaliana |
AT2G29790:CDS:11 | 143 | Chr2: 12721225-12721367 | Arabidopsis thaliana |
AT2G29790:CDS:8.1 | 39 | Chr2: 12721624-12721662 | Arabidopsis thaliana |
AT2G29790:CDS:6.1 | 36 | Chr2: 12721923-12721958 | Arabidopsis thaliana |
AT2G29790:CDS:4.1 | 36 | Chr2: 12722208-12722243 | Arabidopsis thaliana |
AT2G29790:CDS:1.1 | 64 | Chr2: 12722369-12722432 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G29790:exon:10 | 407 | Chr2: 12720614-12721020 | Arabidopsis thaliana |
AT2G29790:exon:1 | 159 | Chr2: 12722369-12722527 | Arabidopsis thaliana |
AT2G29790:exon:9 | 137 | Chr2: 12720884-12721020 | Arabidopsis thaliana |
AT2G29790:exon:7 | 36 | Chr2: 12721332-12721367 | Arabidopsis thaliana |
AT2G29790:exon:3 | 95 | Chr2: 12722369-12722463 | Arabidopsis thaliana |
AT2G29790:exon:8 | 251 | Chr2: 12721117-12721367 | Arabidopsis thaliana |
AT2G29790:exon:6 | 39 | Chr2: 12721624-12721662 | Arabidopsis thaliana |
AT2G29790:exon:5 | 36 | Chr2: 12721923-12721958 | Arabidopsis thaliana |
AT2G29790:exon:4 | 36 | Chr2: 12722208-12722243 | Arabidopsis thaliana |
AT2G29790:exon:2 | 121 | Chr2: 12722369-12722489 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G29790:five_prime_UTR:1 | 95 | Chr2: 12722433-12722527 | Arabidopsis thaliana |
AT2G29790:five_prime_UTR:3 | 89 | Chr2: 12722375-12722463 | Arabidopsis thaliana |
AT2G29790:five_prime_UTR:2 | 57 | Chr2: 12722433-12722489 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G29790.1 | 713 | Chr2: 12720614-12722527 |
AT2G29790.2 | 379 | Chr2: 12720884-12722463 |
AT2G29790.3 | 483 | Chr2: 12721117-12722489 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G29790:three_prime_UTR:3 | 237 | Chr2: 12720614-12720850 | Arabidopsis thaliana |
AT2G29790:three_prime_UTR:2 | 101 | Chr2: 12720884-12720984 | Arabidopsis thaliana |
AT2G29790:three_prime_UTR:1 | 108 | Chr2: 12721117-12721224 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE55600 | 1340 | Chr2: 12719457-12720796 | Arabidopsis thaliana |
AT2TE55605 | 23 | Chr2: 12720797-12720819 | Arabidopsis thaliana |
AT2TE55610 | 42 | Chr2: 12720820-12720861 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE55600:transposon_fragment:1 | 1340 | Chr2: 12719457-12720796 | Arabidopsis thaliana |
AT2TE55605:transposon_fragment:1 | 23 | Chr2: 12720797-12720819 | Arabidopsis thaliana |
AT2TE55610:transposon_fragment:1 | 42 | Chr2: 12720820-12720861 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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