Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G28560:CDS:15 | 41 | Chr2: 12236876-12236916 | Arabidopsis thaliana |
AT2G28560:CDS:13 | 144 | Chr2: 12237096-12237239 | Arabidopsis thaliana |
AT2G28560:CDS:12 | 120 | Chr2: 12237322-12237441 | Arabidopsis thaliana |
AT2G28560:CDS:10 | 92 | Chr2: 12237533-12237624 | Arabidopsis thaliana |
AT2G28560:CDS:9 | 60 | Chr2: 12237725-12237784 | Arabidopsis thaliana |
AT2G28560:CDS:8 | 81 | Chr2: 12237874-12237954 | Arabidopsis thaliana |
AT2G28560:CDS:7 | 56 | Chr2: 12238062-12238117 | Arabidopsis thaliana |
AT2G28560:CDS:6 | 64 | Chr2: 12238219-12238282 | Arabidopsis thaliana |
AT2G28560:CDS:5 | 104 | Chr2: 12238356-12238459 | Arabidopsis thaliana |
AT2G28560:CDS:4 | 153 | Chr2: 12238574-12238726 | Arabidopsis thaliana |
AT2G28560:CDS:2 | 114 | Chr2: 12238812-12238925 | Arabidopsis thaliana |
AT2G28560:CDS:1 | 84 | Chr2: 12239003-12239086 | Arabidopsis thaliana |
AT2G28560:CDS:15.1 | 41 | Chr2: 12236876-12236916 | Arabidopsis thaliana |
AT2G28560:CDS:13.1 | 144 | Chr2: 12237096-12237239 | Arabidopsis thaliana |
AT2G28560:CDS:12.1 | 120 | Chr2: 12237322-12237441 | Arabidopsis thaliana |
AT2G28560:CDS:10.1 | 92 | Chr2: 12237533-12237624 | Arabidopsis thaliana |
AT2G28560:CDS:9.1 | 60 | Chr2: 12237725-12237784 | Arabidopsis thaliana |
AT2G28560:CDS:8.1 | 81 | Chr2: 12237874-12237954 | Arabidopsis thaliana |
AT2G28560:CDS:7.1 | 56 | Chr2: 12238062-12238117 | Arabidopsis thaliana |
AT2G28560:CDS:6.1 | 64 | Chr2: 12238219-12238282 | Arabidopsis thaliana |
AT2G28560:CDS:5.1 | 104 | Chr2: 12238356-12238459 | Arabidopsis thaliana |
AT2G28560:CDS:4.1 | 153 | Chr2: 12238574-12238726 | Arabidopsis thaliana |
AT2G28560:CDS:2.1 | 114 | Chr2: 12238812-12238925 | Arabidopsis thaliana |
AT2G28560:CDS:1.1 | 84 | Chr2: 12239003-12239086 | Arabidopsis thaliana |
AT2G28560:CDS:15.2 | 41 | Chr2: 12236876-12236916 | Arabidopsis thaliana |
AT2G28560:CDS:13.2 | 144 | Chr2: 12237096-12237239 | Arabidopsis thaliana |
AT2G28560:CDS:12.2 | 120 | Chr2: 12237322-12237441 | Arabidopsis thaliana |
AT2G28560:CDS:10.2 | 92 | Chr2: 12237533-12237624 | Arabidopsis thaliana |
AT2G28560:CDS:9.2 | 60 | Chr2: 12237725-12237784 | Arabidopsis thaliana |
AT2G28560:CDS:8.2 | 81 | Chr2: 12237874-12237954 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G28560:exon:24 | 232 | Chr2: 12235875-12236106 | Arabidopsis thaliana |
AT2G28560:exon:20 | 58 | Chr2: 12236680-12236737 | Arabidopsis thaliana |
AT2G28560:exon:2 | 138 | Chr2: 12239003-12239140 | Arabidopsis thaliana |
AT2G28560:exon:22 | 391 | Chr2: 12236526-12236916 | Arabidopsis thaliana |
AT2G28560:exon:23 | 212 | Chr2: 12236526-12236737 | Arabidopsis thaliana |
AT2G28560:exon:19 | 109 | Chr2: 12236808-12236916 | Arabidopsis thaliana |
AT2G28560:exon:3 | 137 | Chr2: 12239003-12239139 | Arabidopsis thaliana |
AT2G28560:exon:21 | 281 | Chr2: 12236636-12236916 | Arabidopsis thaliana |
AT2G28560:exon:16 | 144 | Chr2: 12237096-12237239 | Arabidopsis thaliana |
AT2G28560:exon:5 | 162 | Chr2: 12238812-12238973 | Arabidopsis thaliana |
AT2G28560:exon:18 | 192 | Chr2: 12237048-12237239 | Arabidopsis thaliana |
AT2G28560:exon:14 | 136 | Chr2: 12237322-12237457 | Arabidopsis thaliana |
AT2G28560:exon:4 | 313 | Chr2: 12238812-12239124 | Arabidopsis thaliana |
AT2G28560:exon:17 | 188 | Chr2: 12237052-12237239 | Arabidopsis thaliana |
AT2G28560:exon:15 | 120 | Chr2: 12237322-12237441 | Arabidopsis thaliana |
AT2G28560:exon:13 | 92 | Chr2: 12237533-12237624 | Arabidopsis thaliana |
AT2G28560:exon:12 | 60 | Chr2: 12237725-12237784 | Arabidopsis thaliana |
AT2G28560:exon:11 | 81 | Chr2: 12237874-12237954 | Arabidopsis thaliana |
AT2G28560:exon:10 | 56 | Chr2: 12238062-12238117 | Arabidopsis thaliana |
AT2G28560:exon:9 | 64 | Chr2: 12238219-12238282 | Arabidopsis thaliana |
AT2G28560:exon:8 | 104 | Chr2: 12238356-12238459 | Arabidopsis thaliana |
AT2G28560:exon:7 | 153 | Chr2: 12238574-12238726 | Arabidopsis thaliana |
AT2G28560:exon:6 | 114 | Chr2: 12238812-12238925 | Arabidopsis thaliana |
AT2G28560:exon:1 | 144 | Chr2: 12239003-12239146 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G28560:five_prime_UTR:2 | 54 | Chr2: 12239087-12239140 | Arabidopsis thaliana |
AT2G28560:five_prime_UTR:3 | 53 | Chr2: 12239087-12239139 | Arabidopsis thaliana |
AT2G28560:five_prime_UTR:5 | 60 | Chr2: 12238914-12238973 | Arabidopsis thaliana |
AT2G28560:five_prime_UTR:4 | 211 | Chr2: 12238914-12239124 | Arabidopsis thaliana |
AT2G28560:five_prime_UTR:1 | 60 | Chr2: 12239087-12239146 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G28560.5 | 1525 | Chr2: 12235875-12239140 |
AT2G28560.2 | 1516 | Chr2: 12236526-12239139 |
AT2G28560.6 | 1446 | Chr2: 12236526-12239139 |
AT2G28560.3 | 1317 | Chr2: 12236636-12238973 |
AT2G28560.4 | 1251 | Chr2: 12237048-12239124 |
AT2G28560.1 | 1176 | Chr2: 12237052-12239146 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G28560:three_prime_UTR:8 | 232 | Chr2: 12235875-12236106 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:4 | 58 | Chr2: 12236680-12236737 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:6 | 350 | Chr2: 12236526-12236875 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:7 | 212 | Chr2: 12236526-12236737 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:3 | 68 | Chr2: 12236808-12236875 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:5 | 240 | Chr2: 12236636-12236875 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:2 | 192 | Chr2: 12237048-12237239 | Arabidopsis thaliana |
AT2G28560:three_prime_UTR:1 | 116 | Chr2: 12237322-12237437 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RA51B_ARATH-3 RA51B_ARATH RA51B_ARATH-2 | function | May be involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. |
RA51B_ARATH-3 RA51B_ARATH RA51B_ARATH-2 | similarity | Belongs to the RecA family. RAD51 subfamily. |
RA51B_ARATH-3 RA51B_ARATH RA51B_ARATH-2 | tissue specificity | Preferentially expressed in flower buds and roots. |
Function
Gene Ontology
cellular component | |
---|---|
Rad51B-Rad51C-Rad51D-XRCC2 complex | ECO |
molecular function | |
ATP binding | ECO |
ATP hydrolysis activity | ECO |
ATP-dependent DNA damage sensor activity | ECO |
DNA strand exchange activity | ECO |
DNA binding | ECO |
biological process | |
DNA repair | ECO |
double-strand break repair via homologous recombination | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...