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Gene : PUB4 A. thaliana

DB identifier  ? AT2G23140 Secondary Identifier  ? locus:2045334
Name  ? plant U-box 4 Brief Description  RING/U-box superfamily protein with ARM repeat domain-containing protein
TAIR Computational Description  RING/U-box superfamily protein with ARM repeat domain-containing protein;(source:Araport11)
TAIR Curator Summary  PUB4 encodes a functional ubiquitin-protein ligase. The gene is expressed in most plant tissues and the protein localizes to the nucleus. PUB4 has been recovered as a second site suppressor from several different genetic screens and from these, it has been inferred to have roles in regulating root development, pollen tapetum development and ROS induced chloroplast degredation.
TAIR Short Description  RING/U-box superfamily protein with ARM repeat domain.
TAIR Aliases  AtPUB4, PUB4

8 Gene Rifs

1 Organism

18 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3970  
Location: Chr2:9845410-9849379 reverse strand

Gene models - PUB4 AT2G23140

? Gene models

Transcripts: 5  Exons: 23  Introns: 18 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PUB4_ARATH function Functions as an E3 ubiquitin ligase.
A0A1P8AYN7_ARATH F4ILG6_ARATH PUB4_ARATH pathway Protein modification; protein ubiquitination.

3 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
ubiquitin-protein transferase activity  ? ECO  
biological process
protein ubiquitination  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets