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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G22670:CDS:3 | 488 | Chr2: 9637136-9637623 | Arabidopsis thaliana |
AT2G22670:CDS:4 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:CDS:5 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:CDS:6 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:CDS:7 | 44 | Chr2: 9638416-9638459 | Arabidopsis thaliana |
AT2G22670:CDS:1 | 21 | Chr2: 9636877-9636897 | Arabidopsis thaliana |
AT2G22670:CDS:2 | 518 | Chr2: 9637106-9637623 | Arabidopsis thaliana |
AT2G22670:CDS:4.1 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:CDS:5.1 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:CDS:6.1 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:CDS:7.1 | 44 | Chr2: 9638416-9638459 | Arabidopsis thaliana |
AT2G22670:CDS:3.1 | 488 | Chr2: 9637136-9637623 | Arabidopsis thaliana |
AT2G22670:CDS:4.2 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:CDS:5.2 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:CDS:6.2 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:CDS:8 | 38 | Chr2: 9638422-9638459 | Arabidopsis thaliana |
AT2G22670:CDS:3.2 | 488 | Chr2: 9637136-9637623 | Arabidopsis thaliana |
AT2G22670:CDS:4.3 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:CDS:5.3 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:CDS:6.3 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:CDS:8.1 | 38 | Chr2: 9638422-9638459 | Arabidopsis thaliana |
AT2G22670:CDS:3.3 | 488 | Chr2: 9637136-9637623 | Arabidopsis thaliana |
AT2G22670:CDS:4.4 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:CDS:5.4 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:CDS:6.4 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:CDS:7.2 | 44 | Chr2: 9638416-9638459 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G22670:exon:1 | 292 | Chr2: 9636346-9636637 | Arabidopsis thaliana |
AT2G22670:exon:15 | 346 | Chr2: 9638416-9638761 | Arabidopsis thaliana |
AT2G22670:exon:2 | 258 | Chr2: 9636380-9636637 | Arabidopsis thaliana |
AT2G22670:exon:6 | 90 | Chr2: 9636808-9636897 | Arabidopsis thaliana |
AT2G22670:exon:14 | 330 | Chr2: 9638416-9638745 | Arabidopsis thaliana |
AT2G22670:exon:4 | 483 | Chr2: 9636440-9636922 | Arabidopsis thaliana |
AT2G22670:exon:9 | 518 | Chr2: 9637106-9637623 | Arabidopsis thaliana |
AT2G22670:exon:3 | 198 | Chr2: 9636440-9636637 | Arabidopsis thaliana |
AT2G22670:exon:7 | 816 | Chr2: 9636808-9637623 | Arabidopsis thaliana |
AT2G22670:exon:16 | 246 | Chr2: 9638422-9638667 | Arabidopsis thaliana |
AT2G22670:exon:5 | 146 | Chr2: 9636492-9636637 | Arabidopsis thaliana |
AT2G22670:exon:8 | 521 | Chr2: 9637103-9637623 | Arabidopsis thaliana |
AT2G22670:exon:10 | 230 | Chr2: 9637721-9637950 | Arabidopsis thaliana |
AT2G22670:exon:11 | 142 | Chr2: 9638047-9638188 | Arabidopsis thaliana |
AT2G22670:exon:12 | 62 | Chr2: 9638275-9638336 | Arabidopsis thaliana |
AT2G22670:exon:13 | 268 | Chr2: 9638416-9638683 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G22670:five_prime_UTR:1 | 292 | Chr2: 9636346-9636637 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:2 | 258 | Chr2: 9636380-9636637 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:6 | 69 | Chr2: 9636808-9636876 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:4 | 483 | Chr2: 9636440-9636922 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:9 | 30 | Chr2: 9637106-9637135 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:3 | 198 | Chr2: 9636440-9636637 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:7 | 328 | Chr2: 9636808-9637135 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:5 | 146 | Chr2: 9636492-9636637 | Arabidopsis thaliana |
AT2G22670:five_prime_UTR:8 | 33 | Chr2: 9637103-9637135 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G22670.1 | 1590 | Chr2: 9636346-9638761 |
AT2G22670.4 | 1630 | Chr2: 9636380-9638745 |
AT2G22670.2 | 1681 | Chr2: 9636440-9638667 |
AT2G22670.5 | 1694 | Chr2: 9636440-9638667 |
AT2G22670.3 | 1369 | Chr2: 9636492-9638683 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G22670:three_prime_UTR:4 | 302 | Chr2: 9638460-9638761 | Arabidopsis thaliana |
AT2G22670:three_prime_UTR:3 | 286 | Chr2: 9638460-9638745 | Arabidopsis thaliana |
AT2G22670:three_prime_UTR:1 | 208 | Chr2: 9638460-9638667 | Arabidopsis thaliana |
AT2G22670:three_prime_UTR:2 | 224 | Chr2: 9638460-9638683 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4IKE6_ARATH F4IKE9_ARATH | function | Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. |
IAA8_ARATH | function | Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression. |
IAA8_ARATH F4IKE6_ARATH F4IKE9_ARATH | similarity | Belongs to the Aux/IAA family. |
IAA8_ARATH | tissue specificity | Highly expressed in the whole plant. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...