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Gene : AT2G20650 A. thaliana

DB identifier  ? AT2G20650 Secondary Identifier  ? locus:2046036
Brief Description  RING/U-box superfamily protein
TAIR Computational Description  RING/U-box superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a putative RING E3 ubiquitin ligase based on its 84.5% amino acid identity with FLY1, which possesses this activity in vitro. It is predicted to be localized to the endomembrane system based on protein topology.The mucilage of fly2 mutant seeds hydrated in water resembles wild type seed mucilage.
TAIR Short Description  RING/U-box superfamily protein
TAIR Aliases  FLY2

0 Gene Rifs

1 Organism

4 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3997  
Location: Chr2:8903343-8907339 reverse strand

Gene models - AT2G20650 AT2G20650

? Gene models

Transcripts: 2  Exons: 28  Introns: 26 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
FLY2_ARATH function E3 ubiquitin-protein ligase that may be involved in xylem development.
FLY2_ARATH pathway Protein modification; protein ubiquitination.
FLY2_ARATH tissue specificity Highly expressed in stems. Expressed in root xylem and seed coat.

1 Proteins

Function

Gene Ontology

cellular component
endomembrane system  ? ECO  
membrane  ? ECO  
molecular function
ubiquitin-protein transferase activity  ? ECO  
metal ion binding  ? ECO  
biological process
protein ubiquitination  ? ECO  
plant-type cell wall modification  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets