External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G20170:CDS:1 | 156 | Chr2: 8701013-8701168 | Arabidopsis thaliana |
AT2G20170:CDS:2 | 87 | Chr2: 8701608-8701694 | Arabidopsis thaliana |
AT2G20170:CDS:3 | 222 | Chr2: 8701814-8702035 | Arabidopsis thaliana |
AT2G20170:CDS:4 | 156 | Chr2: 8702118-8702273 | Arabidopsis thaliana |
AT2G20170:CDS:5 | 51 | Chr2: 8702361-8702411 | Arabidopsis thaliana |
AT2G20170:CDS:6 | 147 | Chr2: 8702506-8702652 | Arabidopsis thaliana |
AT2G20170:CDS:7 | 387 | Chr2: 8703009-8703395 | Arabidopsis thaliana |
AT2G20170:CDS:1.1 | 156 | Chr2: 8701013-8701168 | Arabidopsis thaliana |
AT2G20170:CDS:2.1 | 87 | Chr2: 8701608-8701694 | Arabidopsis thaliana |
AT2G20170:CDS:3.1 | 222 | Chr2: 8701814-8702035 | Arabidopsis thaliana |
AT2G20170:CDS:4.1 | 156 | Chr2: 8702118-8702273 | Arabidopsis thaliana |
AT2G20170:CDS:6.1 | 147 | Chr2: 8702506-8702652 | Arabidopsis thaliana |
AT2G20170:CDS:7.1 | 387 | Chr2: 8703009-8703395 | Arabidopsis thaliana |
AT2G20170:CDS:1.2 | 156 | Chr2: 8701013-8701168 | Arabidopsis thaliana |
AT2G20170:CDS:2.2 | 87 | Chr2: 8701608-8701694 | Arabidopsis thaliana |
AT2G20170:CDS:3.2 | 222 | Chr2: 8701814-8702035 | Arabidopsis thaliana |
AT2G20170:CDS:4.2 | 156 | Chr2: 8702118-8702273 | Arabidopsis thaliana |
AT2G20170:CDS:5.1 | 51 | Chr2: 8702361-8702411 | Arabidopsis thaliana |
AT2G20170:CDS:6.2 | 147 | Chr2: 8702506-8702652 | Arabidopsis thaliana |
AT2G20170:CDS:7.2 | 387 | Chr2: 8703009-8703395 | Arabidopsis thaliana |
AT2G20180:CDS:10 | 84 | Chr2: 8704276-8704359 | Arabidopsis thaliana |
AT2G20180:CDS:10.1 | 84 | Chr2: 8704276-8704359 | Arabidopsis thaliana |
AT2G20180:CDS:10.2 | 84 | Chr2: 8704276-8704359 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G20170:exon:8 | 569 | Chr2: 8703009-8703577 | Arabidopsis thaliana |
AT2G20170:exon:1 | 156 | Chr2: 8701013-8701168 | Arabidopsis thaliana |
AT2G20170:exon:2 | 87 | Chr2: 8701608-8701694 | Arabidopsis thaliana |
AT2G20170:exon:3 | 222 | Chr2: 8701814-8702035 | Arabidopsis thaliana |
AT2G20170:exon:4 | 156 | Chr2: 8702118-8702273 | Arabidopsis thaliana |
AT2G20170:exon:5 | 51 | Chr2: 8702361-8702411 | Arabidopsis thaliana |
AT2G20170:exon:6 | 147 | Chr2: 8702506-8702652 | Arabidopsis thaliana |
AT2G20170:exon:7 | 399 | Chr2: 8703009-8703407 | Arabidopsis thaliana |
AT2G20170:exon:9 | 108 | Chr2: 8703913-8704020 | Arabidopsis thaliana |
AT2G20170:exon:10 | 84 | Chr2: 8704121-8704204 | Arabidopsis thaliana |
AT2G20170:exon:11 | 50 | Chr2: 8704308-8704357 | Arabidopsis thaliana |
AT2G20180:exon:17 | 336 | Chr2: 8704024-8704359 | Arabidopsis thaliana |
AT2G20180:exon:16 | 325 | Chr2: 8704035-8704359 | Arabidopsis thaliana |
AT2G20180:exon:15 | 84 | Chr2: 8704276-8704359 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G20180 | locus:2061634 | PIL5 | phytochrome interacting factor 3-like 5 | 2986 | Chr2: 8704024-8707009 | A. thaliana | phytochrome interacting factor 3-like 5;(source:Araport11) | Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. | phytochrome interacting factor 3-like 5 | PIF1, PIL5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G20170.2 | 1388 | Chr2: 8701013-8703577 |
AT2G20170.3 | 1337 | Chr2: 8701013-8703577 |
AT2G20170.1 | 1460 | Chr2: 8701013-8704357 |
AT2G20180.2 | 2088 | Chr2: 8704024-8707004 |
AT2G20180.1 | 2051 | Chr2: 8704024-8707004 |
AT2G20180.3 | 1913 | Chr2: 8704035-8707009 |
AT2G20180.5 | 1762 | Chr2: 8704276-8706900 |
AT2G20180.4 | 1799 | Chr2: 8704276-8706900 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G20170:three_prime_UTR:2 | 182 | Chr2: 8703396-8703577 | Arabidopsis thaliana |
AT2G20170:three_prime_UTR:1 | 12 | Chr2: 8703396-8703407 | Arabidopsis thaliana |
AT2G20170:three_prime_UTR:3 | 108 | Chr2: 8703913-8704020 | Arabidopsis thaliana |
AT2G20170:three_prime_UTR:4 | 84 | Chr2: 8704121-8704204 | Arabidopsis thaliana |
AT2G20170:three_prime_UTR:5 | 50 | Chr2: 8704308-8704357 | Arabidopsis thaliana |
AT2G20180:three_prime_UTR:3 | 336 | Chr2: 8704024-8704359 | Arabidopsis thaliana |
AT2G20180:three_prime_UTR:2 | 241 | Chr2: 8704035-8704275 | Arabidopsis thaliana |