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This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17510:CDS:28 | 199 | Chr2: 7609395-7609593 | Arabidopsis thaliana |
AT2G17510:CDS:27 | 66 | Chr2: 7609820-7609885 | Arabidopsis thaliana |
AT2G17510:CDS:26 | 82 | Chr2: 7609977-7610058 | Arabidopsis thaliana |
AT2G17510:CDS:25 | 96 | Chr2: 7610329-7610424 | Arabidopsis thaliana |
AT2G17510:CDS:24 | 106 | Chr2: 7610500-7610605 | Arabidopsis thaliana |
AT2G17510:CDS:23 | 60 | Chr2: 7610697-7610756 | Arabidopsis thaliana |
AT2G17510:CDS:22 | 121 | Chr2: 7610938-7611058 | Arabidopsis thaliana |
AT2G17510:CDS:21 | 112 | Chr2: 7611447-7611558 | Arabidopsis thaliana |
AT2G17510:CDS:20 | 100 | Chr2: 7611726-7611825 | Arabidopsis thaliana |
AT2G17510:CDS:19 | 55 | Chr2: 7611921-7611975 | Arabidopsis thaliana |
AT2G17510:CDS:18 | 107 | Chr2: 7612239-7612345 | Arabidopsis thaliana |
AT2G17510:CDS:17 | 53 | Chr2: 7612432-7612484 | Arabidopsis thaliana |
AT2G17510:CDS:16 | 126 | Chr2: 7612562-7612687 | Arabidopsis thaliana |
AT2G17510:CDS:14 | 69 | Chr2: 7612998-7613066 | Arabidopsis thaliana |
AT2G17510:CDS:13 | 157 | Chr2: 7613185-7613341 | Arabidopsis thaliana |
AT2G17510:CDS:11 | 241 | Chr2: 7613492-7613732 | Arabidopsis thaliana |
AT2G17510:CDS:10 | 157 | Chr2: 7614012-7614168 | Arabidopsis thaliana |
AT2G17510:CDS:9 | 241 | Chr2: 7614266-7614506 | Arabidopsis thaliana |
AT2G17510:CDS:8 | 131 | Chr2: 7614611-7614741 | Arabidopsis thaliana |
AT2G17510:CDS:7 | 123 | Chr2: 7614855-7614977 | Arabidopsis thaliana |
AT2G17510:CDS:6 | 56 | Chr2: 7615102-7615157 | Arabidopsis thaliana |
AT2G17510:CDS:5 | 158 | Chr2: 7615361-7615518 | Arabidopsis thaliana |
AT2G17510:CDS:4 | 132 | Chr2: 7615605-7615736 | Arabidopsis thaliana |
AT2G17510:CDS:3 | 54 | Chr2: 7615828-7615881 | Arabidopsis thaliana |
AT2G17510:CDS:28.1 | 199 | Chr2: 7609395-7609593 | Arabidopsis thaliana |
AT2G17510:CDS:27.1 | 66 | Chr2: 7609820-7609885 | Arabidopsis thaliana |
AT2G17510:CDS:26.1 | 82 | Chr2: 7609977-7610058 | Arabidopsis thaliana |
AT2G17510:CDS:25.1 | 96 | Chr2: 7610329-7610424 | Arabidopsis thaliana |
AT2G17510:CDS:24.1 | 106 | Chr2: 7610500-7610605 | Arabidopsis thaliana |
AT2G17510:CDS:23.1 | 60 | Chr2: 7610697-7610756 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17500:exon:14 | 396 | Chr2: 7608866-7609261 | Arabidopsis thaliana |
AT2G17500:exon:15 | 413 | Chr2: 7608866-7609278 | Arabidopsis thaliana |
AT2G17510:exon:29 | 358 | Chr2: 7609236-7609593 | Arabidopsis thaliana |
AT2G17510:exon:14 | 69 | Chr2: 7612998-7613066 | Arabidopsis thaliana |
AT2G17510:exon:11 | 241 | Chr2: 7613492-7613732 | Arabidopsis thaliana |
AT2G17510:exon:3 | 173 | Chr2: 7615828-7616000 | Arabidopsis thaliana |
AT2G17510:exon:28 | 256 | Chr2: 7609338-7609593 | Arabidopsis thaliana |
AT2G17510:exon:27 | 66 | Chr2: 7609820-7609885 | Arabidopsis thaliana |
AT2G17510:exon:26 | 82 | Chr2: 7609977-7610058 | Arabidopsis thaliana |
AT2G17510:exon:25 | 96 | Chr2: 7610329-7610424 | Arabidopsis thaliana |
AT2G17510:exon:24 | 106 | Chr2: 7610500-7610605 | Arabidopsis thaliana |
AT2G17510:exon:23 | 60 | Chr2: 7610697-7610756 | Arabidopsis thaliana |
AT2G17510:exon:22 | 121 | Chr2: 7610938-7611058 | Arabidopsis thaliana |
AT2G17510:exon:21 | 112 | Chr2: 7611447-7611558 | Arabidopsis thaliana |
AT2G17510:exon:20 | 100 | Chr2: 7611726-7611825 | Arabidopsis thaliana |
AT2G17510:exon:19 | 55 | Chr2: 7611921-7611975 | Arabidopsis thaliana |
AT2G17510:exon:18 | 107 | Chr2: 7612239-7612345 | Arabidopsis thaliana |
AT2G17510:exon:17 | 53 | Chr2: 7612432-7612484 | Arabidopsis thaliana |
AT2G17510:exon:16 | 126 | Chr2: 7612562-7612687 | Arabidopsis thaliana |
AT2G17510:exon:15 | 105 | Chr2: 7612962-7613066 | Arabidopsis thaliana |
AT2G17510:exon:13 | 157 | Chr2: 7613185-7613341 | Arabidopsis thaliana |
AT2G17510:exon:12 | 307 | Chr2: 7613426-7613732 | Arabidopsis thaliana |
AT2G17510:exon:10 | 157 | Chr2: 7614012-7614168 | Arabidopsis thaliana |
AT2G17510:exon:9 | 241 | Chr2: 7614266-7614506 | Arabidopsis thaliana |
AT2G17510:exon:8 | 131 | Chr2: 7614611-7614741 | Arabidopsis thaliana |
AT2G17510:exon:7 | 123 | Chr2: 7614855-7614977 | Arabidopsis thaliana |
AT2G17510:exon:6 | 56 | Chr2: 7615102-7615157 | Arabidopsis thaliana |
AT2G17510:exon:5 | 158 | Chr2: 7615361-7615518 | Arabidopsis thaliana |
AT2G17510:exon:4 | 132 | Chr2: 7615605-7615736 | Arabidopsis thaliana |
AT2G17510:exon:2 | 179 | Chr2: 7615828-7616006 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17510:five_prime_UTR:2 | 119 | Chr2: 7615882-7616000 | Arabidopsis thaliana |
AT2G17510:five_prime_UTR:1 | 100 | Chr2: 7616243-7616342 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G17500 | locus:2053908 | AT2G17500 | 2551 | Chr2: 7606728-7609278 | A. thaliana | Auxin efflux carrier family protein;(source:Araport11) | NULL | Auxin efflux carrier family protein | PILS5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G17500.2 | 1724 | Chr2: 7606728-7609261 |
AT2G17500.1 | 1676 | Chr2: 7606757-7609261 |
AT2G17500.3 | 1638 | Chr2: 7606784-7609278 |
AT2G17500.4 | 1637 | Chr2: 7606905-7609278 |
AT2G17510.1 | 3080 | Chr2: 7609236-7616000 |
AT2G17510.2 | 3196 | Chr2: 7609338-7616342 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17500:three_prime_UTR:1 | 271 | Chr2: 7608991-7609261 | Arabidopsis thaliana |
AT2G17500:three_prime_UTR:2 | 288 | Chr2: 7608991-7609278 | Arabidopsis thaliana |
AT2G17510:three_prime_UTR:2 | 159 | Chr2: 7609236-7609394 | Arabidopsis thaliana |
AT2G17510:three_prime_UTR:1 | 57 | Chr2: 7609338-7609394 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RP44A_ARATH | function | Catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Required for 5.8S rRNA intermediate processing and the degradation of 5' external transcribed spacer (5' ETS), a maturation by-product of rRNA synthesis. Is not involved in the degradation of turnip crinkle virus (TCV) RNA and significant virus resistance (PubMed:24244451). Required for normal development of female gametophytes and early embryogenesis (PubMed:20798041, PubMed:24244451). |
F4INI6_ARATH RP44A_ARATH | similarity | Belongs to the RNR ribonuclease family. |
Function
Gene Ontology
cellular component | |
---|---|
nuclear exosome (RNase complex) | ECO |
cytoplasmic exosome (RNase complex) | ECO |
molecular function | |
metal ion binding | ECO |
RNA binding | ECO |
endonuclease activity | ECO |
3'-5'-RNA exonuclease activity | ECO |
biological process | |
rRNA catabolic process | ECO |
rRNA processing | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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