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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17150:CDS:5 | 1092 | Chr2: 7468131-7469222 | Arabidopsis thaliana |
AT2G17150:CDS:3 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:CDS:1 | 834 | Chr2: 7469700-7470533 | Arabidopsis thaliana |
AT2G17150:CDS:7 | 839 | Chr2: 7467049-7467887 | Arabidopsis thaliana |
AT2G17150:CDS:4 | 1009 | Chr2: 7468214-7469222 | Arabidopsis thaliana |
AT2G17150:CDS:3.1 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:CDS:1.1 | 834 | Chr2: 7469700-7470533 | Arabidopsis thaliana |
AT2G17150:CDS:5.1 | 1092 | Chr2: 7468131-7469222 | Arabidopsis thaliana |
AT2G17150:CDS:3.2 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:CDS:1.2 | 834 | Chr2: 7469700-7470533 | Arabidopsis thaliana |
AT2G17150:CDS:7.1 | 839 | Chr2: 7467049-7467887 | Arabidopsis thaliana |
AT2G17150:CDS:4.1 | 1009 | Chr2: 7468214-7469222 | Arabidopsis thaliana |
AT2G17150:CDS:2 | 117 | Chr2: 7469302-7469418 | Arabidopsis thaliana |
AT2G17150:CDS:7.2 | 839 | Chr2: 7467049-7467887 | Arabidopsis thaliana |
AT2G17150:CDS:4.2 | 1009 | Chr2: 7468214-7469222 | Arabidopsis thaliana |
AT2G17150:CDS:3.3 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:CDS:1.3 | 834 | Chr2: 7469700-7470533 | Arabidopsis thaliana |
AT2G17150:CDS:6 | 1083 | Chr2: 7468131-7469213 | Arabidopsis thaliana |
AT2G17150:CDS:3.4 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:CDS:1.4 | 834 | Chr2: 7469700-7470533 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17140:exon:4 | 486 | Chr2: 7466266-7466751 | Arabidopsis thaliana |
AT2G17140:exon:5 | 24 | Chr2: 7466875-7466898 | Arabidopsis thaliana |
AT2G17150:exon:3 | 713 | Chr2: 7470874-7471586 | Arabidopsis thaliana |
AT2G17150:exon:11 | 2536 | Chr2: 7466687-7469222 | Arabidopsis thaliana |
AT2G17150:exon:12 | 1201 | Chr2: 7466687-7467887 | Arabidopsis thaliana |
AT2G17150:exon:6 | 1393 | Chr2: 7469302-7470694 | Arabidopsis thaliana |
AT2G17150:exon:1 | 412 | Chr2: 7471175-7471586 | Arabidopsis thaliana |
AT2G17150:exon:10 | 1133 | Chr2: 7466755-7467887 | Arabidopsis thaliana |
AT2G17150:exon:8 | 1009 | Chr2: 7468214-7469222 | Arabidopsis thaliana |
AT2G17150:exon:4 | 389 | Chr2: 7470874-7471262 | Arabidopsis thaliana |
AT2G17150:exon:9 | 1140 | Chr2: 7468074-7469213 | Arabidopsis thaliana |
AT2G17150:exon:7 | 48 | Chr2: 7469302-7469349 | Arabidopsis thaliana |
AT2G17150:exon:5 | 995 | Chr2: 7469700-7470694 | Arabidopsis thaliana |
AT2G17150:exon:2 | 133 | Chr2: 7471175-7471307 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17150:five_prime_UTR:3 | 713 | Chr2: 7470874-7471586 | Arabidopsis thaliana |
AT2G17150:five_prime_UTR:6 | 1276 | Chr2: 7469419-7470694 | Arabidopsis thaliana |
AT2G17150:five_prime_UTR:1 | 412 | Chr2: 7471175-7471586 | Arabidopsis thaliana |
AT2G17150:five_prime_UTR:4 | 389 | Chr2: 7470874-7471262 | Arabidopsis thaliana |
AT2G17150:five_prime_UTR:5 | 161 | Chr2: 7470534-7470694 | Arabidopsis thaliana |
AT2G17150:five_prime_UTR:2 | 133 | Chr2: 7471175-7471307 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G17140 | locus:2827701 | AT2G17140 | 4090 | Chr2: 7462809-7466898 | A. thaliana | Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) | NULL | Pentatricopeptide repeat (PPR) superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G17140.1 | 3215 | Chr2: 7462809-7466751 |
AT2G17140.2 | 2908 | Chr2: 7462809-7466898 |
AT2G17150.3 | 4292 | Chr2: 7466687-7471586 |
AT2G17150.1 | 3665 | Chr2: 7466687-7471586 |
AT2G17150.5 | 3991 | Chr2: 7466687-7471586 |
AT2G17150.4 | 4015 | Chr2: 7466687-7471586 |
AT2G17150.6 | 3574 | Chr2: 7466755-7471262 |
AT2G17150.2 | 2316 | Chr2: 7468074-7471307 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G17140:three_prime_UTR:3 | 486 | Chr2: 7466266-7466751 | Arabidopsis thaliana |
AT2G17140:three_prime_UTR:4 | 24 | Chr2: 7466875-7466898 | Arabidopsis thaliana |
AT2G17150:three_prime_UTR:3 | 1444 | Chr2: 7466687-7468130 | Arabidopsis thaliana |
AT2G17150:three_prime_UTR:4 | 362 | Chr2: 7466687-7467048 | Arabidopsis thaliana |
AT2G17150:three_prime_UTR:2 | 294 | Chr2: 7466755-7467048 | Arabidopsis thaliana |
AT2G17150:three_prime_UTR:1 | 57 | Chr2: 7468074-7468130 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NLP1_ARATH NLP1_ARATH-2 | function | Probable transcription factor. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA-binding transcription factor activity | ECO |
DNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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