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Gene : AT1G80780 A. thaliana

DB identifier  ? AT1G80780 Secondary Identifier  ? locus:2025692
Brief Description  Polynucleotidyl transferase, ribonuclease H-like superfamily protein
TAIR Computational Description  Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
TAIR Curator Summary  Deadenylase.
TAIR Short Description  Polynucleotidyl transferase, ribonuclease H-like superfamily protein
TAIR Aliases  CAF1j

0 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1607  
Location: Chr1:30358000-30359606

Gene models - AT1G80780 AT1G80780

? Gene models

Transcripts: 3  Exons: 6  Introns: 3 

Overlapping Features Displayer

9 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
F4HU15_ARATH function Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression.
CAF1F_ARATH function Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression (By similarity).
F4HU15_ARATH CAF1F_ARATH similarity Belongs to the CAF1 family.
CAF1F_ARATH tissue specificity Expressed in flowers.

2 Proteins

Function

Gene Ontology

cellular component
CCR4-NOT core complex  ? ECO  
nucleus  ? ECO  
P-body  ? ECO  
molecular function
metal ion binding  ? ECO  
RNA binding  ? ECO  
poly(A)-specific ribonuclease activity  ? ECO  
biological process
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets