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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80490:CDS:24 | 214 | Chr1: 30261094-30261307 | Arabidopsis thaliana |
AT1G80490:CDS:23 | 167 | Chr1: 30261386-30261552 | Arabidopsis thaliana |
AT1G80490:CDS:22 | 189 | Chr1: 30261639-30261827 | Arabidopsis thaliana |
AT1G80490:CDS:21 | 225 | Chr1: 30261910-30262134 | Arabidopsis thaliana |
AT1G80490:CDS:20 | 180 | Chr1: 30262225-30262404 | Arabidopsis thaliana |
AT1G80490:CDS:19 | 111 | Chr1: 30262486-30262596 | Arabidopsis thaliana |
AT1G80490:CDS:18 | 147 | Chr1: 30262665-30262811 | Arabidopsis thaliana |
AT1G80490:CDS:17 | 63 | Chr1: 30262899-30262961 | Arabidopsis thaliana |
AT1G80490:CDS:16 | 141 | Chr1: 30263058-30263198 | Arabidopsis thaliana |
AT1G80490:CDS:15 | 235 | Chr1: 30263279-30263513 | Arabidopsis thaliana |
AT1G80490:CDS:14 | 128 | Chr1: 30263618-30263745 | Arabidopsis thaliana |
AT1G80490:CDS:13 | 96 | Chr1: 30263844-30263939 | Arabidopsis thaliana |
AT1G80490:CDS:12 | 96 | Chr1: 30264037-30264132 | Arabidopsis thaliana |
AT1G80490:CDS:11 | 74 | Chr1: 30264211-30264284 | Arabidopsis thaliana |
AT1G80490:CDS:10 | 70 | Chr1: 30264355-30264424 | Arabidopsis thaliana |
AT1G80490:CDS:9 | 110 | Chr1: 30264511-30264620 | Arabidopsis thaliana |
AT1G80490:CDS:8 | 172 | Chr1: 30264717-30264888 | Arabidopsis thaliana |
AT1G80490:CDS:6 | 110 | Chr1: 30265000-30265109 | Arabidopsis thaliana |
AT1G80490:CDS:5 | 124 | Chr1: 30265249-30265372 | Arabidopsis thaliana |
AT1G80490:CDS:4 | 178 | Chr1: 30265490-30265667 | Arabidopsis thaliana |
AT1G80490:CDS:3 | 273 | Chr1: 30265760-30266032 | Arabidopsis thaliana |
AT1G80490:CDS:2 | 180 | Chr1: 30266115-30266294 | Arabidopsis thaliana |
AT1G80490:CDS:1 | 80 | Chr1: 30266367-30266446 | Arabidopsis thaliana |
AT1G80490:CDS:24.1 | 214 | Chr1: 30261094-30261307 | Arabidopsis thaliana |
AT1G80490:CDS:23.1 | 167 | Chr1: 30261386-30261552 | Arabidopsis thaliana |
AT1G80490:CDS:22.1 | 189 | Chr1: 30261639-30261827 | Arabidopsis thaliana |
AT1G80490:CDS:21.1 | 225 | Chr1: 30261910-30262134 | Arabidopsis thaliana |
AT1G80490:CDS:20.1 | 180 | Chr1: 30262225-30262404 | Arabidopsis thaliana |
AT1G80490:CDS:19.1 | 111 | Chr1: 30262486-30262596 | Arabidopsis thaliana |
AT1G80490:CDS:18.1 | 147 | Chr1: 30262665-30262811 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80490:exon:30 | 490 | Chr1: 30260818-30261307 | Arabidopsis thaliana |
AT1G80490:exon:1 | 226 | Chr1: 30266900-30267125 | Arabidopsis thaliana |
AT1G80490:exon:29 | 463 | Chr1: 30260845-30261307 | Arabidopsis thaliana |
AT1G80490:exon:11 | 107 | Chr1: 30265000-30265106 | Arabidopsis thaliana |
AT1G80490:exon:5 | 142 | Chr1: 30266367-30266508 | Arabidopsis thaliana |
AT1G80490:exon:2 | 220 | Chr1: 30266900-30267119 | Arabidopsis thaliana |
AT1G80490:exon:28 | 405 | Chr1: 30260903-30261307 | Arabidopsis thaliana |
AT1G80490:exon:27 | 167 | Chr1: 30261386-30261552 | Arabidopsis thaliana |
AT1G80490:exon:26 | 189 | Chr1: 30261639-30261827 | Arabidopsis thaliana |
AT1G80490:exon:25 | 225 | Chr1: 30261910-30262134 | Arabidopsis thaliana |
AT1G80490:exon:24 | 180 | Chr1: 30262225-30262404 | Arabidopsis thaliana |
AT1G80490:exon:23 | 111 | Chr1: 30262486-30262596 | Arabidopsis thaliana |
AT1G80490:exon:22 | 147 | Chr1: 30262665-30262811 | Arabidopsis thaliana |
AT1G80490:exon:21 | 63 | Chr1: 30262899-30262961 | Arabidopsis thaliana |
AT1G80490:exon:20 | 141 | Chr1: 30263058-30263198 | Arabidopsis thaliana |
AT1G80490:exon:19 | 235 | Chr1: 30263279-30263513 | Arabidopsis thaliana |
AT1G80490:exon:18 | 128 | Chr1: 30263618-30263745 | Arabidopsis thaliana |
AT1G80490:exon:17 | 96 | Chr1: 30263844-30263939 | Arabidopsis thaliana |
AT1G80490:exon:16 | 96 | Chr1: 30264037-30264132 | Arabidopsis thaliana |
AT1G80490:exon:15 | 74 | Chr1: 30264211-30264284 | Arabidopsis thaliana |
AT1G80490:exon:14 | 70 | Chr1: 30264355-30264424 | Arabidopsis thaliana |
AT1G80490:exon:13 | 110 | Chr1: 30264511-30264620 | Arabidopsis thaliana |
AT1G80490:exon:12 | 172 | Chr1: 30264717-30264888 | Arabidopsis thaliana |
AT1G80490:exon:10 | 110 | Chr1: 30265000-30265109 | Arabidopsis thaliana |
AT1G80490:exon:9 | 124 | Chr1: 30265249-30265372 | Arabidopsis thaliana |
AT1G80490:exon:8 | 178 | Chr1: 30265490-30265667 | Arabidopsis thaliana |
AT1G80490:exon:7 | 273 | Chr1: 30265760-30266032 | Arabidopsis thaliana |
AT1G80490:exon:6 | 180 | Chr1: 30266115-30266294 | Arabidopsis thaliana |
AT1G80490:exon:4 | 174 | Chr1: 30266367-30266540 | Arabidopsis thaliana |
AT1G80490:exon:3 | 139 | Chr1: 30266900-30267038 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80490:five_prime_UTR:1 | 226 | Chr1: 30266900-30267125 | Arabidopsis thaliana |
AT1G80490:five_prime_UTR:5 | 62 | Chr1: 30266447-30266508 | Arabidopsis thaliana |
AT1G80490:five_prime_UTR:2 | 220 | Chr1: 30266900-30267119 | Arabidopsis thaliana |
AT1G80490:five_prime_UTR:4 | 94 | Chr1: 30266447-30266540 | Arabidopsis thaliana |
AT1G80490:five_prime_UTR:3 | 139 | Chr1: 30266900-30267038 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G80490.2 | 3927 | Chr1: 30260818-30267125 |
AT1G80490.1 | 3891 | Chr1: 30260845-30267119 |
AT1G80490.3 | 3787 | Chr1: 30260903-30267038 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80490:three_prime_UTR:3 | 276 | Chr1: 30260818-30261093 | Arabidopsis thaliana |
AT1G80490:three_prime_UTR:2 | 249 | Chr1: 30260845-30261093 | Arabidopsis thaliana |
AT1G80490:three_prime_UTR:1 | 191 | Chr1: 30260903-30261093 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
TPR1_ARATH TPR1_ARATH-1 | function | Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1 (PubMed:20647385). Negative regulator of jasmonate responses (By similarity). |
TPR1_ARATH TPR1_ARATH-1 | tissue specificity | Highly expressed in stamen primordium, microsporocyte, ovule primordium and megasporocyte during sporogenesis. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
primary shoot apical meristem specification | ECO |
regulation of DNA-templated transcription | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...